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NECEvent2014_4_7_Anaerococcus_vaginalis_29_18_partial

NECEvent2014_4_7_Anaerococcus_vaginalis_29_14
In projects: NECEvent2014_4_7

Consensus taxonomy: Anaerococcus vaginalis  →  Anaerococcus  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

Refined by ESOM

Displaying items 1-50 of 139 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
NECEvent2014_4_7_scaffold_1737
174_007_scaffold_1737
4 3801 bp 27.81 113.02 52.88
NECEvent2014_4_7_scaffold_5414
174_007_scaffold_5414
Species: Enterococcus faecalis (100%)
1 1024 bp 41.89 105.18 77.64
NECEvent2014_4_7_scaffold_4875
174_007_scaffold_4875
1 1171 bp 44.41 79.80 8.45
NECEvent2014_4_7_scaffold_3543
174_007_scaffold_3543
Species: Anaerococcus hydrogenalis (100%)
1 1722 bp 32.11 71.43 74.22
NECEvent2014_4_7_scaffold_791
174_007_scaffold_791
11 8350 bp 29.78 47.71 65.68
NECEvent2014_4_7_scaffold_4106
174_007_scaffold_4106
Species: Enterococcus faecium (100%)
1 1447 bp 25.85 47.06 62.82
NECEvent2014_4_7_scaffold_4211
174_007_scaffold_4211
Species: Streptococcus gallolyticus (100%)
1 1404 bp 26.64 41.13 59.83
NECEvent2014_4_7_scaffold_5322
174_007_scaffold_5322
Species: Streptococcus pneumoniae (50%)
2 1046 bp 30.40 39.87 83.75
NECEvent2014_4_7_scaffold_5287
174_007_scaffold_5287
Species: Anaerococcus vaginalis (100%)
1 1054 bp 30.93 35.01 99.62
NECEvent2014_4_7_scaffold_5393
174_007_scaffold_5393
Order: Clostridiales (66.67%)
3 1029 bp 29.74 34.84 67.64
NECEvent2014_4_7_scaffold_4617
174_007_scaffold_4617
8 1255 bp 42.87 34.66 53.78
NECEvent2014_4_7_scaffold_4532
174_007_scaffold_4532
Species: Streptococcus tigurinus (100%)
1 1286 bp 30.33 34.18 99.84
NECEvent2014_4_7_scaffold_4796
174_007_scaffold_4796
Species: Anaerococcus vaginalis (100%)
1 1200 bp 40.75 33.75 98.75
NECEvent2014_4_7_scaffold_4187
174_007_scaffold_4187
Species: Anaerococcus lactolyticus (100%)
1 1417 bp 31.26 33.56 99.93
NECEvent2014_4_7_scaffold_3933
174_007_scaffold_3933
Species: Anaerococcus vaginalis (100%)
1 1523 bp 32.96 29.94 99.87
NECEvent2014_4_7_scaffold_3081
174_007_scaffold_3081
Species: Peptoniphilus sp. BV3C26 (50%)
2 2026 bp 32.43 24.80 100.25
NECEvent2014_4_7_scaffold_2706
174_007_scaffold_2706
Order: Clostridiales (100%)
3 2365 bp 33.66 23.02 82.96
NECEvent2014_4_7_scaffold_5310
174_007_scaffold_5310
Species: Finegoldia magna (50%)
2 1048 bp 28.05 22.90 62.12
NECEvent2014_4_7_scaffold_5185
174_007_scaffold_5185
Species: Anaerococcus hydrogenalis (100%)
1 1085 bp 31.06 22.53 74.93
NECEvent2014_4_7_scaffold_1231
174_007_scaffold_1231
Species: Finegoldia magna (60%)
10 5258 bp 34.52 22.02 92.72
NECEvent2014_4_7_scaffold_1580
174_007_scaffold_1580
Genus: Anaerococcus (60%)
5 4117 bp 31.19 21.79 100.56
NECEvent2014_4_7_scaffold_4219
174_007_scaffold_4219
Species: Peptoniphilus duerdenii (100%)
2 1398 bp 30.54 21.78 93.56
NECEvent2014_4_7_scaffold_296
174_007_scaffold_296
Species: Anaerococcus vaginalis (80%)
25 24333 bp 29.54 21.39 91.90
NECEvent2014_4_7_scaffold_4403
174_007_scaffold_4403
Genus: Peptoniphilus (75%)
4 1329 bp 32.13 20.99 99.32
NECEvent2014_4_7_scaffold_2132
174_007_scaffold_2132
Species: Anaerococcus hydrogenalis (50%)
6 3062 bp 29.52 20.53 95.72
NECEvent2014_4_7_scaffold_547
174_007_scaffold_547
Order: Clostridiales (84.62%)
13 12762 bp 29.36 20.50 88.25
NECEvent2014_4_7_scaffold_3563
174_007_scaffold_3563
Species: Finegoldia magna (50%)
4 1712 bp 35.28 20.33 99.71
NECEvent2014_4_7_scaffold_1465
174_007_scaffold_1465
Species: Finegoldia magna (50%)
8 4457 bp 32.08 20.29 88.65
NECEvent2014_4_7_scaffold_3689
174_007_scaffold_3689
Species: Finegoldia magna (100%)
1 1645 bp 30.27 19.88 99.94
NECEvent2014_4_7_scaffold_656
174_007_scaffold_656
Order: Clostridiales (100%)
11 10454 bp 29.87 19.60 97.43
NECEvent2014_4_7_scaffold_4423
174_007_scaffold_4423
Species: Peptoniphilus duerdenii (100%)
1 1323 bp 27.97 19.50 100.00
NECEvent2014_4_7_scaffold_2757
174_007_scaffold_2757
Species: Anaerococcus prevotii (75%)
4 2316 bp 28.67 19.43 71.37
NECEvent2014_4_7_scaffold_2324
174_007_scaffold_2324
Species: Anaerococcus lactolyticus (100%)
1 2797 bp 30.75 19.20 99.96
NECEvent2014_4_7_scaffold_3720
174_007_scaffold_3720
Species: Anaerococcus prevotii (75%)
4 1632 bp 36.15 18.93 98.90
NECEvent2014_4_7_scaffold_1586
174_007_scaffold_1586
Species: Peptoniphilus harei (50%)
2 4108 bp 29.26 18.44 90.63
NECEvent2014_4_7_scaffold_3366
174_007_scaffold_3366
Genus: Streptococcus (66.67%)
3 1825 bp 28.55 18.25 69.37
NECEvent2014_4_7_scaffold_660
174_007_scaffold_660
Order: Clostridiales (90%)
10 10331 bp 30.43 18.13 96.67
NECEvent2014_4_7_scaffold_2041
174_007_scaffold_2041
Species: Anaerococcus vaginalis (100%)
1 3209 bp 30.01 17.95 86.94
NECEvent2014_4_7_scaffold_369
174_007_scaffold_369
Order: Clostridiales (52.94%)
17 19536 bp 30.27 17.85 94.43
NECEvent2014_4_7_scaffold_1003
174_007_scaffold_1003
Species: Anaerococcus vaginalis (50%)
2 6424 bp 33.67 17.77 87.10
NECEvent2014_4_7_scaffold_670
174_007_scaffold_670
Genus: Peptoniphilus (54.55%)
11 10167 bp 29.95 17.57 86.93
NECEvent2014_4_7_scaffold_739
174_007_scaffold_739
Order: Clostridiales (77.78%)
9 8989 bp 30.90 17.22 89.04
NECEvent2014_4_7_scaffold_864
174_007_scaffold_864
Order: Clostridiales (75%)
8 7741 bp 28.78 17.19 88.09
NECEvent2014_4_7_scaffold_437
174_007_scaffold_437
Species: Clostridiales bacterium S5-A11 (52.63%)
19 16360 bp 33.33 17.12 90.11
NECEvent2014_4_7_scaffold_694
174_007_scaffold_694
Species: Anaerococcus vaginalis (50%)
14 9736 bp 31.52 16.98 86.14
NECEvent2014_4_7_scaffold_755
174_007_scaffold_755
Species: Streptococcus pyogenes (50%)
8 8754 bp 32.36 16.96 85.06
NECEvent2014_4_7_scaffold_219
174_007_scaffold_219
Order: Clostridiales (92.31%)
26 28506 bp 27.58 16.94 91.57
NECEvent2014_4_7_scaffold_2389
174_007_scaffold_2389
Species: Anaerococcus prevotii (50%)
2 2722 bp 35.27 16.48 100.96
NECEvent2014_4_7_scaffold_1763
174_007_scaffold_1763
Species: Anaerococcus vaginalis (100%)
5 3746 bp 33.37 16.30 90.66
NECEvent2014_4_7_scaffold_760
174_007_scaffold_760
Order: Clostridiales (100%)
9 8696 bp 32.66 16.11 94.35
Displaying items 1-50 of 139 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.