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NECEvent2014_5_1_Propionibacterium_HGH0353_63-rel_12

NECEvent2014_5_1_Propionibacterium_sp__HGH0353_63_13
In projects: NECEvent2014_5_1

Consensus taxonomy: Propionibacterium sp. HGH0353  →  Propionibacterium  →  Propionibacteriales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

16S rRNA gene is 99% to Propionibacterium sp. H456

Displaying items 1-50 of 546 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_1_scaffold_3475 175_007_scaffold_3475
Species: Propionibacterium sp. DORA_15 (100%)
2 1411 bp 63.57 140.22 88.87
NECEvent2014_5_1_scaffold_3664 175_007_scaffold_3664
Species: Propionibacterium avidum (50%)
2 1342 bp 65.80 62.15 93.22
NECEvent2014_5_1_scaffold_4533 175_007_scaffold_4533
Species: Dietzia sp. UCD-THP (100%)
1 1082 bp 65.16 54.62 99.82
NECEvent2014_5_1_scaffold_2994 175_007_scaffold_2994 4 1622 bp 56.35 54.10 32.92
NECEvent2014_5_1_scaffold_2596 175_007_scaffold_2596
Species: Propionibacterium sp. DORA_15 (50%)
2 1832 bp 55.62 48.80 25.38
NECEvent2014_5_1_scaffold_3589 175_007_scaffold_3589
Species: Propionibacterium sp. DORA_15 (100%)
1 1373 bp 54.62 39.00 19.88
NECEvent2014_5_1_scaffold_3427 175_007_scaffold_3427
Species: Propionibacterium sp. HGH0353 (100%)
1 1427 bp 66.85 35.32 85.98
NECEvent2014_5_1_scaffold_2192 175_007_scaffold_2192
Species: Propionibacterium sp. HGH0353 (50%)
2 2117 bp 47.99 26.50 66.75
NECEvent2014_5_1_scaffold_1038 175_007_scaffold_1038
Species: Propionibacterium sp. DORA_15 (100%)
3 4241 bp 50.72 25.89 78.59
NECEvent2014_5_1_scaffold_3351 175_007_scaffold_3351
Species: Propionibacterium avidum (100%)
1 1459 bp 67.65 20.15 89.65
NECEvent2014_5_1_scaffold_4910 175_007_scaffold_4910
Species: Propionibacterium sp. KPL2005 (100%)
2 1005 bp 57.61 18.96 85.07
NECEvent2014_5_1_scaffold_2196 175_007_scaffold_2196
Species: Propionibacterium sp. HGH0353 (75%)
4 2115 bp 63.07 18.94 96.45
NECEvent2014_5_1_scaffold_3678 175_007_scaffold_3678
Species: Propionibacterium avidum (100%)
1 1338 bp 68.09 18.39 99.78
NECEvent2014_5_1_scaffold_3103 175_007_scaffold_3103
Species: Propionibacterium sp. HGH0353 (50%)
2 1568 bp 62.63 17.98 95.47
NECEvent2014_5_1_scaffold_531 175_007_scaffold_531
Genus: Propionibacterium (100%)
9 8127 bp 63.48 17.57 92.84
NECEvent2014_5_1_scaffold_757 175_007_scaffold_757
Species: Propionibacterium sp. HGH0353 (50%)
4 5855 bp 63.95 17.50 94.28
NECEvent2014_5_1_scaffold_3147 175_007_scaffold_3147
Species: Propionibacterium sp. HGH0353 (100%)
1 1548 bp 69.32 17.34 100.00
NECEvent2014_5_1_scaffold_3560 175_007_scaffold_3560
Species: Propionibacterium sp. KPL1852 (50%)
2 1382 bp 65.92 17.15 98.55
NECEvent2014_5_1_scaffold_155 175_007_scaffold_155
Species: Propionibacterium sp. HGH0353 (74.07%)
27 29016 bp 61.90 17.08 88.65
NECEvent2014_5_1_scaffold_2133 175_007_scaffold_2133
Genus: Propionibacterium (66.67%)
3 2174 bp 60.86 17.04 86.80
NECEvent2014_5_1_scaffold_2350 175_007_scaffold_2350
Species: Propionibacterium sp. HGH0353 (100%)
2 1995 bp 66.87 16.99 100.00
NECEvent2014_5_1_scaffold_1299 175_007_scaffold_1299
Species: Propionibacterium sp. HGH0353 (60%)
5 3388 bp 64.96 16.91 89.70
NECEvent2014_5_1_scaffold_536 175_007_scaffold_536
Genus: Propionibacterium (87.5%)
8 8026 bp 63.74 16.91 85.00
NECEvent2014_5_1_scaffold_3278 175_007_scaffold_3278
Species: Propionibacterium sp. HGH0353 (50%)
2 1491 bp 63.65 16.90 99.80
NECEvent2014_5_1_scaffold_1266 175_007_scaffold_1266
Species: Propionibacterium sp. HGH0353 (100%)
3 3474 bp 63.39 16.71 90.33
NECEvent2014_5_1_scaffold_431 175_007_scaffold_431
Species: Propionibacterium sp. HGH0353 (100%)
7 10102 bp 62.45 16.66 89.77
NECEvent2014_5_1_scaffold_511 175_007_scaffold_511
Species: Propionibacterium sp. HGH0353 (75%)
12 8467 bp 62.44 16.62 87.87
NECEvent2014_5_1_scaffold_4003 175_007_scaffold_4003 3 1228 bp 59.61 16.61 53.50
NECEvent2014_5_1_scaffold_509 175_007_scaffold_509
Genus: Propionibacterium (88.89%)
9 8512 bp 64.71 16.60 90.24
NECEvent2014_5_1_scaffold_457 175_007_scaffold_457
Species: Propionibacterium sp. HGH0353 (100%)
7 9539 bp 61.00 16.48 79.95
NECEvent2014_5_1_scaffold_3610 175_007_scaffold_3610
Species: Propionibacterium sp. KPL2005 (100%)
1 1365 bp 63.37 16.48 49.23
NECEvent2014_5_1_scaffold_490 175_007_scaffold_490
Species: Propionibacterium sp. HGH0353 (88.89%)
9 8951 bp 64.02 16.46 89.35
NECEvent2014_5_1_scaffold_1100 175_007_scaffold_1100
Species: Propionibacterium sp. HGH0353 (100%)
3 4034 bp 64.70 16.44 94.45
NECEvent2014_5_1_scaffold_1586 175_007_scaffold_1586
Species: Propionibacterium sp. KPL1852 (100%)
1 2766 bp 64.53 16.43 91.97
NECEvent2014_5_1_scaffold_630 175_007_scaffold_630
Species: Propionibacterium sp. HGH0353 (100%)
4 7052 bp 63.44 16.38 87.08
NECEvent2014_5_1_scaffold_2402 175_007_scaffold_2402
Species: Propionibacterium sp. HGH0353 (100%)
2 1953 bp 64.52 16.36 100.15
NECEvent2014_5_1_scaffold_3661 175_007_scaffold_3661
Species: Propionibacterium sp. HGH0353 (100%)
1 1344 bp 61.83 16.29 97.54
NECEvent2014_5_1_scaffold_285 175_007_scaffold_285
Species: Propionibacterium sp. HGH0353 (71.43%)
14 15526 bp 62.94 16.24 92.51
NECEvent2014_5_1_scaffold_1353 175_007_scaffold_1353
Species: Propionibacterium sp. HGH0353 (100%)
2 3265 bp 63.37 16.17 93.17
NECEvent2014_5_1_scaffold_2024 175_007_scaffold_2024
Species: Propionibacterium avidum (50%)
2 2280 bp 65.96 16.12 99.87
NECEvent2014_5_1_scaffold_2106 175_007_scaffold_2106
Genus: Propionibacterium (100%)
3 2205 bp 67.17 16.12 100.27
NECEvent2014_5_1_scaffold_3540 175_007_scaffold_3540
Species: Propionibacterium sp. HGH0353 (100%)
2 1387 bp 65.10 16.11 72.67
NECEvent2014_5_1_scaffold_3304 175_007_scaffold_3304
Species: Propionibacterium sp. HGH0353 (50%)
2 1478 bp 63.46 16.04 85.45
NECEvent2014_5_1_scaffold_4881 175_007_scaffold_4881
Species: Propionibacterium sp. KPL1838 (100%)
1 1011 bp 61.72 16.02 100.00
NECEvent2014_5_1_scaffold_591 175_007_scaffold_591
Genus: Propionibacterium (100%)
9 7417 bp 61.78 16.02 82.27
NECEvent2014_5_1_scaffold_594 175_007_scaffold_594
Species: Propionibacterium sp. HGH0353 (100%)
5 7411 bp 63.00 16.01 92.42
NECEvent2014_5_1_scaffold_2304 175_007_scaffold_2304
Species: Propionibacterium sp. HGH0353 (100%)
3 2034 bp 66.67 16.00 71.98
NECEvent2014_5_1_scaffold_389 175_007_scaffold_389
Species: Propionibacterium sp. HGH0353 (87.5%)
8 11278 bp 65.38 15.99 93.77
NECEvent2014_5_1_scaffold_1252 175_007_scaffold_1252
Species: Propionibacterium sp. HGH0353 (66.67%)
3 3490 bp 65.50 15.99 100.06
NECEvent2014_5_1_scaffold_774 175_007_scaffold_774
Species: Propionibacterium sp. HGH0353 (100%)
5 5695 bp 64.79 15.96 87.71
Displaying items 1-50 of 546 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.