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NECEvent2014_5_1_Propionibacterium_HGH0353_63-rel_12

NECEvent2014_5_1_Propionibacterium_sp__HGH0353_63_13
In projects: NECEvent2014_5_1

Consensus taxonomy: Propionibacterium sp. HGH0353  →  Propionibacterium  →  Propionibacteriales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

16S rRNA gene is 99% to Propionibacterium sp. H456

Displaying items 201-250 of 546 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_1_scaffold_1836 175_007_scaffold_1836
Genus: Propionibacterium (100%)
3 2484 bp 66.02 13.71 88.65
NECEvent2014_5_1_scaffold_657 175_007_scaffold_657
Species: Propionibacterium sp. HGH0353 (71.43%)
7 6800 bp 63.29 13.70 90.57
NECEvent2014_5_1_scaffold_1379 175_007_scaffold_1379
Species: Propionibacterium sp. KPL1838 (66.67%)
6 3188 bp 66.37 13.69 98.15
NECEvent2014_5_1_scaffold_749 175_007_scaffold_749
Species: Propionibacterium sp. HGH0353 (100%)
6 5902 bp 65.74 13.67 97.70
NECEvent2014_5_1_scaffold_1660 175_007_scaffold_1660
Species: Propionibacterium sp. HGH0353 (75%)
4 2675 bp 61.61 13.63 101.38
NECEvent2014_5_1_scaffold_4257 175_007_scaffold_4257
Species: Propionibacterium sp. HGH0353 (100%)
2 1156 bp 64.10 13.62 86.68
NECEvent2014_5_1_scaffold_231 175_007_scaffold_231
Species: Propionibacterium sp. HGH0353 (77.27%)
22 19326 bp 63.07 13.61 90.59
NECEvent2014_5_1_scaffold_865 175_007_scaffold_865
Species: Propionibacterium sp. HGH0353 (100%)
3 5091 bp 68.04 13.61 100.06
NECEvent2014_5_1_scaffold_93 175_007_scaffold_93
Species: Propionibacterium sp. HGH0353 (78.13%)
32 42614 bp 62.76 13.60 92.78
NECEvent2014_5_1_scaffold_684 175_007_scaffold_684
Species: Propionibacterium sp. HGH0353 (100%)
7 6568 bp 60.31 13.59 96.19
NECEvent2014_5_1_scaffold_335 175_007_scaffold_335
Genus: Propionibacterium (86.67%)
15 13083 bp 63.96 13.59 89.84
NECEvent2014_5_1_scaffold_1503 175_007_scaffold_1503
Species: Propionibacterium sp. HGH0353 (50%)
4 2920 bp 58.80 13.56 75.31
NECEvent2014_5_1_scaffold_188 175_007_scaffold_188
Species: Propionibacterium sp. HGH0353 (69.57%)
23 23450 bp 61.96 13.54 93.95
NECEvent2014_5_1_scaffold_923 175_007_scaffold_923
Species: Propionibacterium sp. KPL1838 (60%)
5 4815 bp 65.21 13.52 92.96
NECEvent2014_5_1_scaffold_828 175_007_scaffold_828
Species: Propionibacterium sp. KPL1838 (50%)
4 5357 bp 63.90 13.50 91.06
NECEvent2014_5_1_scaffold_1364 175_007_scaffold_1364
Species: Propionibacterium sp. KPL1838 (66.67%)
3 3233 bp 63.93 13.50 79.15
NECEvent2014_5_1_scaffold_4324 175_007_scaffold_4324
Species: Propionibacterium sp. KPL1838 (100%)
1 1136 bp 62.15 13.47 99.82
NECEvent2014_5_1_scaffold_736 175_007_scaffold_736
Genus: Propionibacterium (57.14%)
7 6035 bp 62.65 13.45 91.47
NECEvent2014_5_1_scaffold_3341 175_007_scaffold_3341
Species: Propionibacterium avidum (50%)
2 1462 bp 64.98 13.44 90.49
NECEvent2014_5_1_scaffold_2868 175_007_scaffold_2868
Genus: Propionibacterium (100%)
3 1685 bp 62.61 13.44 100.06
NECEvent2014_5_1_scaffold_866 175_007_scaffold_866
Genus: Propionibacterium (100%)
7 5090 bp 63.18 13.44 95.48
NECEvent2014_5_1_scaffold_2737 175_007_scaffold_2737
Genus: Propionibacterium (100%)
3 1753 bp 63.78 13.43 87.79
NECEvent2014_5_1_scaffold_355 175_007_scaffold_355
Species: Propionibacterium sp. HGH0353 (61.54%)
13 12389 bp 64.73 13.43 93.86
NECEvent2014_5_1_scaffold_779 175_007_scaffold_779
Species: Propionibacterium sp. HGH0353 (75%)
4 5667 bp 64.25 13.42 89.47
NECEvent2014_5_1_scaffold_575 175_007_scaffold_575
Genus: Propionibacterium (100%)
7 7581 bp 65.23 13.42 94.46
NECEvent2014_5_1_scaffold_131 175_007_scaffold_131
Species: Propionibacterium sp. HGH0353 (84.38%)
32 34441 bp 63.38 13.41 91.83
NECEvent2014_5_1_scaffold_856 175_007_scaffold_856
Species: Propionibacterium sp. HGH0353 (80%)
5 5146 bp 62.59 13.41 90.48
NECEvent2014_5_1_scaffold_964 175_007_scaffold_964
Species: Propionibacterium sp. HGH0353 (60%)
5 4605 bp 62.69 13.39 84.43
NECEvent2014_5_1_scaffold_672 175_007_scaffold_672
Species: Propionibacterium sp. HGH0353 (80%)
10 9851 bp 62.72 13.38 93.28
NECEvent2014_5_1_scaffold_946 175_007_scaffold_946
Genus: Propionibacterium (100%)
5 4711 bp 64.59 13.37 89.79
NECEvent2014_5_1_scaffold_369 175_007_scaffold_369
Species: Propionibacterium sp. HGH0353 (87.5%)
8 11805 bp 64.27 13.37 93.70
NECEvent2014_5_1_scaffold_1449 175_007_scaffold_1449
Species: Propionibacterium sp. HGH0353 (66.67%)
6 3054 bp 63.82 13.36 80.55
NECEvent2014_5_1_scaffold_1043 175_007_scaffold_1043
Species: Propionibacterium sp. HGH0353 (100%)
3 4222 bp 62.93 13.36 90.10
NECEvent2014_5_1_scaffold_4046 175_007_scaffold_4046
Species: Propionibacterium sp. HGH0353 (100%)
2 1217 bp 67.63 13.31 94.91
NECEvent2014_5_1_scaffold_2109 175_007_scaffold_2109
Species: Propionibacterium sp. KPL2000 (50%)
2 2200 bp 63.86 13.30 91.64
NECEvent2014_5_1_scaffold_175 175_007_scaffold_175
Genus: Propionibacterium (100%)
24 25382 bp 64.06 13.29 94.65
NECEvent2014_5_1_scaffold_288 175_007_scaffold_288
Species: Propionibacterium sp. HGH0353 (70.59%)
17 15433 bp 64.05 13.29 91.10
NECEvent2014_5_1_scaffold_344 175_007_scaffold_344
Genus: Propionibacterium (100%)
7 12659 bp 63.84 13.29 97.71
NECEvent2014_5_1_scaffold_1265 175_007_scaffold_1265
Species: Propionibacterium sp. KPL1838 (75%)
4 3478 bp 64.55 13.24 80.74
NECEvent2014_5_1_scaffold_1826 175_007_scaffold_1826
Species: Propionibacterium sp. HGH0353 (50%)
4 2494 bp 64.88 13.23 88.65
NECEvent2014_5_1_scaffold_1012 175_007_scaffold_1012
Genus: Propionibacterium (100%)
5 4340 bp 64.26 13.20 88.06
NECEvent2014_5_1_scaffold_636 175_007_scaffold_636
Species: Propionibacterium sp. HGH0353 (50%)
8 7009 bp 62.99 13.20 97.08
NECEvent2014_5_1_scaffold_781 175_007_scaffold_781
Species: Propionibacterium sp. HGH0353 (80%)
5 5658 bp 64.25 13.15 99.73
NECEvent2014_5_1_scaffold_1852 175_007_scaffold_1852
Species: Propionibacterium sp. KPL1852 (50%)
2 2468 bp 63.41 13.13 93.84
NECEvent2014_5_1_scaffold_3551 175_007_scaffold_3551
Genus: Propionibacterium (66.67%)
3 1384 bp 62.50 13.11 89.09
NECEvent2014_5_1_scaffold_304 175_007_scaffold_304
Species: Propionibacterium sp. HGH0353 (88.24%)
17 14699 bp 62.54 13.11 91.06
NECEvent2014_5_1_scaffold_3430 175_007_scaffold_3430
Species: Propionibacterium acnes (50%)
2 1426 bp 56.31 13.04 70.06
NECEvent2014_5_1_scaffold_1019 175_007_scaffold_1019
Species: Propionibacterium sp. KPL1838 (60%)
5 4309 bp 66.30 13.02 91.76
NECEvent2014_5_1_scaffold_992 175_007_scaffold_992
Species: Propionibacterium sp. HGH0353 (50%)
4 4433 bp 63.48 12.99 91.22
NECEvent2014_5_1_scaffold_356 175_007_scaffold_356
Species: Propionibacterium sp. HGH0353 (72.73%)
11 12299 bp 63.29 12.99 93.01
Displaying items 201-250 of 546 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.