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NECEvent2014_5_1_scaffold_1400_3

Organism: NECEvent2014_5_1_Pseudomonas_aeruginosa_rel_66_5

partial RP 39 / 55 MC: 2 BSCG 35 / 51 ASCG 10 / 38 MC: 2
Location: comp(1448..2302)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=131 Tax=Pseudomonas RepID=RPOH_PSEAE similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 284.0
  • Bit_score: 562
  • Evalue 2.40e-157
  • rbh
RNA polymerase sigma 70 similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 284.0
  • Bit_score: 562
  • Evalue 6.70e-158
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1402545 species="Bacteria; Proteobacteria; Gammaproteobacter similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 284.0
  • Bit_score: 562
  • Evalue 3.30e-157

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 855
ATGACCACTTCTTTGCAACCTGTACATGCCTTGGTTCCAGGCGCAAACCTGGAAGCCTACGTGCACTCGGTGAACAGCATTCCGCTGTTGTCGCCGGAACAGGAGCGTGAACTGGCCGAACGCCTCTTCTATCAGCAAGACCTGGAAGCGGCGCGGCAGATGGTGTTGGCGCACCTGCGCTTCGTTGTTCATATCGCCAAGAGTTATTCGGGGTACGGCCTGGCCCAGGCCGACCTGATCCAGGAAGGCAACGTCGGCCTGATGAAGGCCGTGAAGCGTTTCAACCCGGAAATGGGCGTTCGCCTGGTGTCCTTCGCCGTGCACTGGATCAAGGCGGAGATCCACGAGTTCATCCTGCGCAACTGGCGGATCGTCAAGGTCGCCACCACCAAGGCGCAGCGCAAGCTGTTCTTCAACCTGCGCAGCCAGAAGAAGCGCCTGGCCTGGTTGAACAACGAGGAAGTCCATCGCGTCGCCGAGAGCCTGGGGGTCGAGCCCCGCGAAGTGCGCGAGATGGAAAGCCGCCTGACCGGCCAGGACATGGCGTTCGACCCGGCCGCCGACGCGGACGACGAGAGCGCCTACCAGTCGCCGGCGCATTACCTCGAAGACCACCGCTACGACCCGGCGCGCCAGTTGGAAGACGCCGACTGGAGCGACAGCTCCAGCGCCAACCTGCACGAGGCGCTGGAAGGCCTCGACGAGCGCAGCCGCGATATTCTCCAGCAGCGCTGGCTGTCCGAGGAGAAGGCCACGCTGCACGACCTGGCGGAAAAGTACAACGTCTCCGCCGAGCGTATCCGGCAGCTGGAAAAGAACGCCATGAGCAAGCTGAAAGGGCGGATTCTCGCCTGA
PROTEIN sequence
Length: 285
MTTSLQPVHALVPGANLEAYVHSVNSIPLLSPEQERELAERLFYQQDLEAARQMVLAHLRFVVHIAKSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVHRVAESLGVEPREVREMESRLTGQDMAFDPAADADDESAYQSPAHYLEDHRYDPARQLEDADWSDSSSANLHEALEGLDERSRDILQQRWLSEEKATLHDLAEKYNVSAERIRQLEKNAMSKLKGRILA*