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NECEvent2014_5_2_scaffold_1386_3

Organism: NECEvent2014_5_2_Actinomyces_60_7

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2
Location: comp(1279..3195)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1127690 species="Bacteria; A similarity UNIPROT
DB: UniProtKB
  • Identity: 81.9
  • Coverage: 629.0
  • Bit_score: 1045
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Actinomyces sp. ph3 RepID=UPI00031D8B94 similarity UNIREF
DB: UNIREF100
  • Identity: 82.2
  • Coverage: 629.0
  • Bit_score: 1045
  • Evalue 0.0
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 70.1
  • Coverage: 632.0
  • Bit_score: 903
  • Evalue 3.60e-260

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Taxonomy

Actinomyces sp. oral taxon 181 → Actinomyces → Actinomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1917
GTGCCGACGAACTCGCTGGATCAGGTCTCCAAATACACGGGATCGGATCAGCCGACACTGACCCGGATGGGTGGGGCTGGCTGGGCGAAGACCAAAGCCAAAGCTCGTAAAGCCGTCAAGGAAATCGCCGCTGAGCTGATCCGCCTGTACGCCGCGCGCCAGGCAACAAAAGGGCACGCGTTCAGCGCTGACACCCCCTGGCAGCGCGAACTTGAAGATGCGTTCCCATATGTGGAAACCCCTGATCAGCTCGTGACAATCGATGAAGTCAAAGCTGATATGGAAAAGCCCATGCCGATGGACCGGCTCCTGACAGGAGACGTGGGATACGGCAAAACCGAGATCGCTGTGCGCGCGGCGTTCAAAGCCATCCAGGACGGCAAGCAGGTTGCTGTGCTGGTTCCCACCACCTTGCTGGTCCAGCAGCACTATGACACCTTCAGCGCTCGCTATGCCGGTTTCCCCGTCACAATTGGGACACTGTCACGTTTTTCCACGCCGAAAGAAGCTGAAGAGGTCAAGGAGGCACTTGCGTCCGGTGGTATTGACCTGGTGATCGGCACACACGCCCTGCTGACGGGCACGGTCCGCTTCAAGGATCTGGGTCTAGTCGTCATTGACGAAGAGCAGCGTTTCGGTGTCGAGCATAAGGAGACACTCAAAGCGCTGCGCACTGATGTGGACGTGCTGTCCATGTCGGCAACACCTATCCCTCGAACACTGGAAATGGCGATTTCCGGTATCCGTGAAATGTCGATCCTGCAGACACCGCCAGAAGAGCGTCAGCCGGTTCTGACATTTGTGGGCGCATACACGGATGCGCAGGTTATCGCTGCAGTCCGGCGCGAGCTGCTGCGTGACGGGCAGGTGTTCTACGTCCATAACCGTGTCGAATCCATCAACACGGTGGCTGCTCACCTCAGCGAACTGGTACCCGAAGCGCGCATCCGTGTCGCTCACGGCAAACTGTCCGAACACGAACTTGAACGCGTCATCGTTGATTTCTGGAACCACGACTTCGACGTGCTGGTGTGCACGACAATCGTGGAAACCGGCCTGGATATTTCCAATGCAAACACCCTGATTGTGGACAGGGCTGACGCGTTCGGTCTGTCACAGCTGCACCAGCTGCGTGGCCGAGTGGGACGAGGGCGCGAACGCGCTTATGCTTACTTCTTTTACCCAGCTGACCGCACTCTTACCGAAACGGCCCATGAACGGTTGCGGACAATCGCCCAGTTCACGGATCTGGGCGCCGGACTGCACGTTGCGCAAAAAGACCTCGAAATCCGCGGTGCCGGCAACCTGCTGGGTGGCGCGCAATCAGGTCATATCGAGGGCGTGGGGTTCGATCTGTACGTGCGTATGGTGGCTGACGCAGTGGCAACATTTAAAGGGGAGCGCCCCGCCGAACAGGTGGACGTGCGAGTGGATCTGGCCGTGGATGCGCATATTCCTGCCGAATATGTGACGAGCGAGCGCCTGCGGCTCGAGGTATACGCCAGGATTGCAGGCGTGAGCACACCTGAACAGGAAAGCGATGTGCGCGATGAGCTGGCCGACCGATACGGCCCAATTCCTCCTCAGGTGGATTTGCTGTTCGACATTGCGCGACTGCGTGAGCGCCTGCGCCAGGTCGGTGTCGAAGAGGTCGCCACTCAGGGACGGTACATCAAGTTCGCACCCGTCGAACTTGCTGATTCACAGATGATGCGCCTGAAGCGGCTGCACCCTGGCGCAGTCATTAAGACTGCGGTGCGTCAGATCCTGGTTCCCATCCCAATGACCGCCCACATCGGTGGGCACCCCTTGGCAGACAGCGCCCTCATCGAGTGGACGCTGAATGTCGTTGACACGATCATCGTGCCTTTCGCCGCCTCATCAGAAGGCGGCGCCCCCGGCGTTAAAGACCGGTGA
PROTEIN sequence
Length: 639
VPTNSLDQVSKYTGSDQPTLTRMGGAGWAKTKAKARKAVKEIAAELIRLYAARQATKGHAFSADTPWQRELEDAFPYVETPDQLVTIDEVKADMEKPMPMDRLLTGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHYDTFSARYAGFPVTIGTLSRFSTPKEAEEVKEALASGGIDLVIGTHALLTGTVRFKDLGLVVIDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYTDAQVIAAVRRELLRDGQVFYVHNRVESINTVAAHLSELVPEARIRVAHGKLSEHELERVIVDFWNHDFDVLVCTTIVETGLDISNANTLIVDRADAFGLSQLHQLRGRVGRGRERAYAYFFYPADRTLTETAHERLRTIAQFTDLGAGLHVAQKDLEIRGAGNLLGGAQSGHIEGVGFDLYVRMVADAVATFKGERPAEQVDVRVDLAVDAHIPAEYVTSERLRLEVYARIAGVSTPEQESDVRDELADRYGPIPPQVDLLFDIARLRERLRQVGVEEVATQGRYIKFAPVELADSQMMRLKRLHPGAVIKTAVRQILVPIPMTAHIGGHPLADSALIEWTLNVVDTIIVPFAASSEGGAPGVKDR*