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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

some extra single copy genes

Displaying items 551-600 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_1859 175_001_scaffold_1859
Order: Propionibacteriales (50%)
4 2782 bp 56.51 5.66 88.96
NECEvent2014_5_2_scaffold_3547 175_001_scaffold_3547
Species: Actinomyces sp. oral taxon 180 (50%)
2 1721 bp 57.58 5.58 88.90
NECEvent2014_5_2_scaffold_5292 175_001_scaffold_5292
Species: Actinomyces neuii (50%)
2 1279 bp 63.72 6.10 88.90
NECEvent2014_5_2_scaffold_1951 175_001_scaffold_1951
Genus: Actinomyces (100%)
4 2673 bp 59.30 7.63 88.89
NECEvent2014_5_2_scaffold_1945 175_001_scaffold_1945
Species: Actinomyces turicensis (50%)
2 2677 bp 61.82 7.06 88.87
NECEvent2014_5_2_scaffold_3727 175_001_scaffold_3727
Species: Actinomyces sp. HPA0247 (50%)
2 1660 bp 58.19 6.33 88.73
NECEvent2014_5_2_scaffold_4190 175_001_scaffold_4190
Genus: Actinomyces (50%)
4 2174 bp 60.58 8.07 88.73
NECEvent2014_5_2_scaffold_3116 175_001_scaffold_3116
Genus: Actinomyces (66.67%)
3 1885 bp 56.71 5.49 88.65
NECEvent2014_5_2_scaffold_6832 175_001_scaffold_6832
Species: Actinomyces odontolyticus (50%)
2 1037 bp 58.05 5.35 88.52
NECEvent2014_5_2_scaffold_3552 175_001_scaffold_3552
Species: Propionimicrobium lymphophilum (50%)
2 1719 bp 61.95 5.76 88.48
NECEvent2014_5_2_scaffold_2717 175_001_scaffold_2717
Species: Actinomyces cardiffensis (66.67%)
3 2089 bp 59.60 5.74 88.46
NECEvent2014_5_2_scaffold_5627 175_001_scaffold_5627
Species: Arcanobacterium haemolyticum (50%)
2 1222 bp 57.45 6.63 88.38
NECEvent2014_5_2_scaffold_2781 175_001_scaffold_2781
Species: Dermabacter sp. HFH0086 (100%)
3 2051 bp 48.81 6.95 88.35
NECEvent2014_5_2_scaffold_3111 175_001_scaffold_3111
Species: Propionibacterium acnes (50%)
2 1886 bp 57.64 6.52 88.28
NECEvent2014_5_2_scaffold_3327 175_001_scaffold_3327
Species: Actinomyces sp. S6-Spd3 (50%)
2 1798 bp 61.07 7.01 88.26
NECEvent2014_5_2_scaffold_3810 175_001_scaffold_3810
Genus: Actinomyces (100%)
3 1635 bp 60.49 6.79 88.26
NECEvent2014_5_2_scaffold_1617 175_001_scaffold_1617
Species: Actinomyces neuii (66.67%)
3 3084 bp 57.10 6.52 88.23
NECEvent2014_5_2_scaffold_1780 175_001_scaffold_1780
Species: Actinomyces sp. S6-Spd3 (50%)
2 2870 bp 60.03 6.69 88.22
NECEvent2014_5_2_scaffold_2143 175_001_scaffold_2143
Species: Actinomyces sp. oral taxon 178 (50%)
2 2479 bp 59.22 5.14 88.22
NECEvent2014_5_2_scaffold_632 175_001_scaffold_632
Class: Actinobacteria (55.56%)
9 7061 bp 58.99 6.63 88.20
NECEvent2014_5_2_scaffold_6671 175_001_scaffold_6671
Class: Actinobacteria (66.67%)
3 1058 bp 59.26 3.40 88.19
NECEvent2014_5_2_scaffold_2245 175_001_scaffold_2245
Genus: Actinomyces (100%)
3 2395 bp 61.00 7.14 88.06
NECEvent2014_5_2_scaffold_1976 175_001_scaffold_1976
Species: Chlamydia trachomatis (50%)
2 2645 bp 57.62 6.01 87.79
NECEvent2014_5_2_scaffold_4191 175_001_scaffold_4191
Genus: Actinomyces (50%)
4 1521 bp 57.66 7.79 87.77
NECEvent2014_5_2_scaffold_1601 175_001_scaffold_1601
Genus: Actinomyces (100%)
3 3107 bp 59.83 8.45 87.77
NECEvent2014_5_2_scaffold_2253 175_001_scaffold_2253
Genus: Actinomyces (66.67%)
3 2386 bp 58.89 5.97 87.76
NECEvent2014_5_2_scaffold_1714 175_001_scaffold_1714
Genus: Actinomyces (80%)
5 2969 bp 58.71 7.38 87.71
NECEvent2014_5_2_scaffold_697 175_001_scaffold_697
Genus: Actinomyces (50%)
8 6407 bp 60.79 7.47 87.65
NECEvent2014_5_2_scaffold_6592 175_001_scaffold_6592
Species: Actinomyces sp. oral taxon 172 (100%)
1 1068 bp 60.86 7.30 87.64
NECEvent2014_5_2_scaffold_2065 175_001_scaffold_2065
Order: Corynebacteriales (66.67%)
3 2553 bp 58.99 5.05 87.54
NECEvent2014_5_2_scaffold_2799 175_001_scaffold_2799
Species: Pseudomonas aeruginosa (100%)
1 2036 bp 63.51 6.63 87.38
NECEvent2014_5_2_scaffold_7095 175_001_scaffold_7095
Species: Propionibacterium propionicum (50%)
2 1006 bp 59.15 8.65 87.38
NECEvent2014_5_2_scaffold_982 175_001_scaffold_982
Class: Actinobacteria (50%)
6 4569 bp 56.71 7.22 87.37
NECEvent2014_5_2_scaffold_1563 175_001_scaffold_1563
Genus: Actinomyces (100%)
3 3166 bp 60.39 7.06 87.37
NECEvent2014_5_2_scaffold_3612 175_001_scaffold_3612
Species: Actinomyces sp. oral taxon 180 (50%)
2 1700 bp 57.18 7.59 87.35
NECEvent2014_5_2_scaffold_4851 175_001_scaffold_4851
Species: Propionibacterium sp. KPL1852 (50%)
2 1364 bp 62.02 4.29 87.32
NECEvent2014_5_2_scaffold_2443 175_001_scaffold_2443
Class: Actinobacteria (50%)
4 2247 bp 58.52 7.88 87.32
NECEvent2014_5_2_scaffold_2857 175_001_scaffold_2857
Domain: Bacteria (50%)
4 2005 bp 59.30 5.31 87.28
NECEvent2014_5_2_scaffold_1389 175_001_scaffold_1389
Genus: Actinomyces (60%)
5 3457 bp 60.63 7.46 87.21
NECEvent2014_5_2_scaffold_757 175_001_scaffold_757
Genus: Actinomyces (50%)
6 5871 bp 53.43 6.72 87.17
NECEvent2014_5_2_scaffold_5277 175_001_scaffold_5277
Genus: Propionibacterium (100%)
3 1281 bp 56.44 8.67 87.12
NECEvent2014_5_2_scaffold_3001 175_001_scaffold_3001
Genus: Microbacterium (66.67%)
3 1936 bp 55.63 5.42 87.09
NECEvent2014_5_2_scaffold_3251 175_001_scaffold_3251
Genus: Actinomyces (66.67%)
3 1831 bp 60.35 6.39 87.00
NECEvent2014_5_2_scaffold_629 175_001_scaffold_629
Domain: Bacteria (53.33%)
15 7084 bp 58.51 7.41 86.91
NECEvent2014_5_2_scaffold_6499 175_001_scaffold_6499
Species: Dermabacter hominis (50%)
2 1081 bp 61.05 5.69 86.86
NECEvent2014_5_2_scaffold_2657 175_001_scaffold_2657
Species: Corynebacterium singulare (50%)
2 2121 bp 57.43 5.66 86.85
NECEvent2014_5_2_scaffold_3504 175_001_scaffold_3504
Species: Actinomyces urogenitalis (50%)
2 1735 bp 60.98 7.44 86.80
NECEvent2014_5_2_scaffold_3307 175_001_scaffold_3307
Class: Actinobacteria (66.67%)
3 1806 bp 56.48 5.90 86.71
NECEvent2014_5_2_scaffold_3084 175_001_scaffold_3084
Species: Propionibacterium sp. KPL2000 (50%)
2 1897 bp 64.47 5.46 86.66
NECEvent2014_5_2_scaffold_2241 175_001_scaffold_2241
Species: Actinomyces sp. S6-Spd3 (50%)
2 2396 bp 59.64 7.39 86.52
Displaying items 551-600 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.