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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 751-800 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_1880 175_001_scaffold_1880
Species: Actinomyces sp. oral taxon 181 (50%)
2 2761 bp 57.19 7.55 100.07
NECEvent2014_5_2_scaffold_2579 175_001_scaffold_2579
Species: Actinomyces europaeus (66.67%)
3 2161 bp 61.59 7.08 100.09
NECEvent2014_5_2_scaffold_1516 175_001_scaffold_1516
Species: Actinomyces sp. oral taxon 877 (50%)
2 3231 bp 64.04 6.82 100.09
NECEvent2014_5_2_scaffold_6738 175_001_scaffold_6738
Species: Actinomyces cardiffensis (50%)
2 1049 bp 59.96 8.44 100.10
NECEvent2014_5_2_scaffold_7004 175_001_scaffold_7004
Species: Actinomyces georgiae (50%)
2 1016 bp 60.14 5.31 100.10
NECEvent2014_5_2_scaffold_2968 175_001_scaffold_2968
Species: Actinomyces sp. oral taxon 877 (50%)
2 1951 bp 62.79 4.61 100.10
NECEvent2014_5_2_scaffold_3728 175_001_scaffold_3728
Species: Propionibacterium sp. HGH0353 (50%)
2 1660 bp 67.35 7.68 100.12
NECEvent2014_5_2_scaffold_3837 175_001_scaffold_3837
Species: Actinomyces odontolyticus (50%)
2 1627 bp 58.51 5.53 100.12
NECEvent2014_5_2_scaffold_4083 175_001_scaffold_4083
Species: Actinomyces sp. oral taxon 181 (50%)
2 1552 bp 62.50 6.96 100.13
NECEvent2014_5_2_scaffold_2547 175_001_scaffold_2547
Species: Chlamydia trachomatis (50%)
2 2184 bp 60.76 5.01 100.14
NECEvent2014_5_2_scaffold_4836 175_001_scaffold_4836
Species: Actinomyces turicensis (50%)
2 1366 bp 59.96 5.71 100.15
NECEvent2014_5_2_scaffold_5592 175_001_scaffold_5592
Species: Actinomyces europaeus (50%)
2 1228 bp 63.84 5.62 100.16
NECEvent2014_5_2_scaffold_5877 175_001_scaffold_5877
Species: Actinomyces sp. S6-Spd3 (50%)
2 1177 bp 62.02 5.86 100.17
NECEvent2014_5_2_scaffold_6089 175_001_scaffold_6089
Species: Austwickia chelonae (50%)
2 1141 bp 67.13 5.78 100.18
NECEvent2014_5_2_scaffold_6500 175_001_scaffold_6500
Species: Actinomyces sp. S6-Spd3 (50%)
2 1081 bp 63.37 3.89 100.18
NECEvent2014_5_2_scaffold_3881 175_001_scaffold_3881
Species: Cellulomonas bogoriensis (100%)
2 1614 bp 61.71 6.13 100.19
NECEvent2014_5_2_scaffold_6553 175_001_scaffold_6553
Species: Actinomyces sp. oral taxon 181 (50%)
2 1075 bp 62.98 5.86 100.19
NECEvent2014_5_2_scaffold_4235 175_001_scaffold_4235
Species: Actinomyces sp. ICM39 (50%)
2 1509 bp 60.04 5.17 100.20
NECEvent2014_5_2_scaffold_4694 175_001_scaffold_4694
Species: Propionibacterium avidum (50%)
2 1398 bp 66.09 6.87 100.22
NECEvent2014_5_2_scaffold_1088 175_001_scaffold_1088
Species: Actinomyces sp. S6-Spd3 (50%)
4 4158 bp 61.09 5.88 100.22
NECEvent2014_5_2_scaffold_4847 175_001_scaffold_4847
Species: Actinotalea fermentans (50%)
2 1365 bp 59.19 7.47 100.22
NECEvent2014_5_2_scaffold_4947 175_001_scaffold_4947
Class: Actinobacteria (66.67%)
3 1347 bp 60.73 7.35 100.22
NECEvent2014_5_2_scaffold_1675 175_001_scaffold_1675
Species: Actinomyces neuii (100%)
4 3020 bp 62.22 7.75 100.23
NECEvent2014_5_2_scaffold_2796 175_001_scaffold_2796
Genus: Actinomyces (100%)
3 2038 bp 63.15 7.95 100.25
NECEvent2014_5_2_scaffold_5669 175_001_scaffold_5669
Species: Propionibacterium sp. KPL1852 (50%)
2 1212 bp 54.79 4.70 100.25
NECEvent2014_5_2_scaffold_2836 175_001_scaffold_2836
Genus: Actinomyces (66.67%)
3 2017 bp 63.41 4.91 100.25
NECEvent2014_5_2_scaffold_4196 175_001_scaffold_4196
Species: Actinomyces cardiffensis (50%)
2 1520 bp 58.29 6.12 100.26
NECEvent2014_5_2_scaffold_4478 175_001_scaffold_4478
Species: Actinomyces sp. HPA0247 (50%)
2 1448 bp 61.81 4.45 100.28
NECEvent2014_5_2_scaffold_4834 175_001_scaffold_4834
Species: Propionibacterium sp. KPL1852 (100%)
2 1367 bp 54.57 6.36 100.29
NECEvent2014_5_2_scaffold_3591 175_001_scaffold_3591
Species: Propionibacterium avidum (100%)
3 1705 bp 56.60 5.28 100.29
NECEvent2014_5_2_scaffold_5319 175_001_scaffold_5319
Species: Actinomyces sp. HPA0247 (50%)
2 1274 bp 62.48 5.18 100.31
NECEvent2014_5_2_scaffold_4338 175_001_scaffold_4338
Genus: Actinomyces (100%)
3 1486 bp 60.77 4.85 100.34
NECEvent2014_5_2_scaffold_6629 175_001_scaffold_6629
Species: Actinomyces turicensis (50%)
2 1064 bp 59.68 6.20 100.38
NECEvent2014_5_2_scaffold_3342 175_001_scaffold_3342
Phylum: Actinobacteria (66.67%)
3 1793 bp 63.64 6.69 100.39
NECEvent2014_5_2_scaffold_2738 175_001_scaffold_2738
Species: Actinomyces sp. S6-Spd3 (100%)
3 2076 bp 61.85 6.65 100.43
NECEvent2014_5_2_scaffold_1134 175_001_scaffold_1134
Species: Actinomyces sp. HPA0247 (66.67%)
3 4032 bp 59.52 7.07 100.45
NECEvent2014_5_2_scaffold_6771 175_001_scaffold_6771
Species: Actinomyces sp. oral taxon 172 (50%)
2 1045 bp 60.38 3.44 100.48
NECEvent2014_5_2_scaffold_5746 175_001_scaffold_5746
Species: Actinomyces sp. oral taxon 181 (50%)
2 1200 bp 61.33 6.75 100.50
NECEvent2014_5_2_scaffold_2138 175_001_scaffold_2138
Genus: Actinomyces (100%)
3 2486 bp 60.46 6.46 100.52
NECEvent2014_5_2_scaffold_2465 175_001_scaffold_2465
Species: Actinomyces cardiffensis (50%)
2 2235 bp 60.45 7.18 100.54
NECEvent2014_5_2_scaffold_2133 175_001_scaffold_2133
Genus: Actinomyces (60%)
5 2491 bp 60.50 6.50 100.56
NECEvent2014_5_2_scaffold_2168 175_001_scaffold_2168
Species: Chlamydia trachomatis (50%)
2 2458 bp 61.68 8.42 100.57
NECEvent2014_5_2_scaffold_4987 175_001_scaffold_4987
Species: Actinomyces turicensis (50%)
2 1339 bp 59.97 9.86 100.60
NECEvent2014_5_2_scaffold_4277 175_001_scaffold_4277
Genus: Actinomyces (66.67%)
3 1500 bp 57.20 7.20 100.60
NECEvent2014_5_2_scaffold_3886 175_001_scaffold_3886
Order: Propionibacteriales (50%)
4 1613 bp 65.47 8.56 100.62
NECEvent2014_5_2_scaffold_6630 175_001_scaffold_6630
Species: Actinomyces sp. S6-Spd3 (50%)
2 1064 bp 59.12 5.36 100.66
NECEvent2014_5_2_scaffold_4980 175_001_scaffold_4980
Species: Actinomyces sp. ICM39 (50%)
2 1341 bp 62.19 6.26 100.67
NECEvent2014_5_2_scaffold_5398 175_001_scaffold_5398
Species: Propionibacterium acidipropionici (100%)
2 1257 bp 58.87 5.85 100.72
NECEvent2014_5_2_scaffold_1491 175_001_scaffold_1491
Genus: Actinomyces (100%)
3 3276 bp 61.08 7.19 100.73
NECEvent2014_5_2_scaffold_5483 175_001_scaffold_5483
Species: Actinomyces cardiffensis (50%)
2 1247 bp 63.51 6.74 100.80
Displaying items 751-800 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.