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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_5_2_UNK

Properties

Avg. coverage: 6.70 Longest contig: 8.97 Kbp Bin length: 1.78 Mbp GC content: 59.17 %
Contigs count: 813 Features count: 2209 rRNAs count: 1 tRNAs count: 28

Genome completeness

partial RP 47 / 55 MC: 5 BSCG 40 / 51 ASCG 12 / 38 MC: 2

Description

some extra single copy genes

Displaying items 751-800 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_2694 175_001_scaffold_2694
Species: [Cellvibrio] gilvus (50%)
2 2104 bp 57.27 8.70 73.15
NECEvent2014_5_2_scaffold_6291 175_001_scaffold_6291
Species: Gordonia polyisoprenivorans (50%)
2 1112 bp 60.07 4.32 73.11
NECEvent2014_5_2_scaffold_2883 175_001_scaffold_2883
Species: Actinomyces turicensis (50%)
2 1989 bp 54.95 8.60 72.70
NECEvent2014_5_2_scaffold_1994 175_001_scaffold_1994
Class: Actinobacteria (66.67%)
3 2622 bp 56.45 7.89 72.65
NECEvent2014_5_2_scaffold_6324 175_001_scaffold_6324
Species: Actinomyces sp. oral taxon 178 (50%)
2 1107 bp 56.19 9.21 72.63
NECEvent2014_5_2_scaffold_6695 175_001_scaffold_6695
Species: Propionibacterium sp. KPL2005 (100%)
1 1054 bp 59.68 5.69 72.58
NECEvent2014_5_2_scaffold_2734 175_001_scaffold_2734
Genus: Propionibacterium (66.67%)
3 2078 bp 57.84 8.66 72.33
NECEvent2014_5_2_scaffold_1305 175_001_scaffold_1305
Species: Propionibacterium freudenreichii (50%)
2 3604 bp 54.52 6.87 71.42
NECEvent2014_5_2_scaffold_3041 175_001_scaffold_3041
Species: Propionibacterium sp. KPL1852 (66.67%)
3 1920 bp 62.29 6.72 71.41
NECEvent2014_5_2_scaffold_5734 175_001_scaffold_5734
Species: Actinotignum schaalii (50%)
2 1202 bp 58.49 5.37 71.38
NECEvent2014_5_2_scaffold_4772 175_001_scaffold_4772
Class: Actinobacteria (66.67%)
3 1381 bp 55.76 4.78 71.04
NECEvent2014_5_2_scaffold_4400 175_001_scaffold_4400
Species: Actinomyces turicensis (66.67%)
3 1466 bp 60.44 6.55 69.78
NECEvent2014_5_2_scaffold_4580 175_001_scaffold_4580
Species: Bifidobacterium reuteri (50%)
2 1423 bp 60.08 6.32 69.57
NECEvent2014_5_2_scaffold_6673 175_001_scaffold_6673
Species: Mobiluncus curtisii (50%)
2 1058 bp 58.70 5.39 69.47
NECEvent2014_5_2_scaffold_5105 175_001_scaffold_5105
Order: Actinomycetales (100%)
3 1313 bp 57.04 5.26 69.46
NECEvent2014_5_2_scaffold_3490 175_001_scaffold_3490
Species: Propionibacterium avidum (50%)
2 1741 bp 60.25 4.65 69.44
NECEvent2014_5_2_scaffold_3757 175_001_scaffold_3757 3 1651 bp 58.45 5.81 69.35
NECEvent2014_5_2_scaffold_5191 175_001_scaffold_5191
Species: Corynebacterium kroppenstedtii (50%)
2 1296 bp 59.49 9.26 68.52
NECEvent2014_5_2_scaffold_5175 175_001_scaffold_5175
Species: Actinomyces georgiae (50%)
2 1299 bp 55.27 6.93 68.13
NECEvent2014_5_2_scaffold_3768 175_001_scaffold_3768
Species: Actinomyces sp. oral taxon 178 (100%)
1 1648 bp 61.23 7.92 67.72
NECEvent2014_5_2_scaffold_3980 175_001_scaffold_3980
Class: Actinobacteria (50%)
4 1581 bp 59.58 4.65 67.62
NECEvent2014_5_2_scaffold_5809 175_001_scaffold_5809
Species: Listeria riparia (50%)
2 1190 bp 56.81 7.82 67.56
NECEvent2014_5_2_scaffold_2429 175_001_scaffold_2429
Genus: Actinomyces (100%)
3 2254 bp 60.07 7.19 67.21
NECEvent2014_5_2_scaffold_2183 175_001_scaffold_2183
Genus: Actinomyces (66.67%)
3 2442 bp 60.32 8.48 67.20
NECEvent2014_5_2_scaffold_1126 175_001_scaffold_1126
Genus: Actinomyces (50%)
6 4042 bp 58.16 6.83 66.60
NECEvent2014_5_2_scaffold_4421 175_001_scaffold_4421
Species: Actinomyces europaeus (100%)
1 1460 bp 57.74 7.60 66.37
NECEvent2014_5_2_scaffold_4013 175_001_scaffold_4013
Species: Dermabacter hominis (50%)
2 1570 bp 61.40 5.54 66.37
NECEvent2014_5_2_scaffold_6788 175_001_scaffold_6788
Species: Brevibacterium linens (50%)
2 1042 bp 57.39 5.76 65.64
NECEvent2014_5_2_scaffold_6382 175_001_scaffold_6382
Species: Actinomyces sp. ICM39 (100%)
1 1097 bp 59.34 7.25 65.63
NECEvent2014_5_2_scaffold_4109 175_001_scaffold_4109
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1544 bp 60.43 6.02 65.09
NECEvent2014_5_2_scaffold_3315 175_001_scaffold_3315
Class: Actinobacteria (66.67%)
3 1803 bp 52.63 5.74 64.56
NECEvent2014_5_2_scaffold_930 175_001_scaffold_930
Genus: Corynebacterium (80%)
5 4777 bp 55.93 6.72 64.06
NECEvent2014_5_2_scaffold_2697 175_001_scaffold_2697
Species: Actinomyces sp. oral taxon 181 (50%)
4 2102 bp 59.94 7.56 63.94
NECEvent2014_5_2_scaffold_4828 175_001_scaffold_4828
Species: Varibaculum cambriense (50%)
2 1368 bp 54.39 6.36 63.82
NECEvent2014_5_2_scaffold_5373 175_001_scaffold_5373
Species: Actinomyces sp. ICM54 (100%)
1 1261 bp 57.10 8.56 63.28
NECEvent2014_5_2_scaffold_3267 175_001_scaffold_3267
Species: Austwickia chelonae (66.67%)
3 1821 bp 57.83 6.10 61.45
NECEvent2014_5_2_scaffold_2064 175_001_scaffold_2064
Species: Beutenbergia cavernae (100%)
1 2553 bp 54.48 7.64 60.40
NECEvent2014_5_2_scaffold_7064 175_001_scaffold_7064
Species: Propionibacterium sp. KPL1852 (100%)
2 1009 bp 59.37 5.65 59.46
NECEvent2014_5_2_scaffold_3651 175_001_scaffold_3651
Species: Propionibacterium freudenreichii (100%)
1 1686 bp 61.92 8.90 59.25
NECEvent2014_5_2_scaffold_6740 175_001_scaffold_6740
Species: Propionibacterium sp. KPL1838 (50%)
2 1049 bp 61.96 7.86 58.53
NECEvent2014_5_2_scaffold_3627 175_001_scaffold_3627 3 1695 bp 56.64 6.11 58.47
NECEvent2014_5_2_scaffold_5297 175_001_scaffold_5297
Genus: Actinomyces (100%)
3 1279 bp 57.47 6.57 58.40
NECEvent2014_5_2_scaffold_2814 175_001_scaffold_2814
Genus: Actinomyces (66.67%)
3 2031 bp 58.00 7.02 57.90
NECEvent2014_5_2_scaffold_2557 175_001_scaffold_2557
Genus: Corynebacterium (50%)
4 2179 bp 59.94 7.16 57.82
NECEvent2014_5_2_scaffold_6816 175_001_scaffold_6816
Species: Actinomyces cardiffensis (50%)
2 1039 bp 58.52 5.20 56.88
NECEvent2014_5_2_scaffold_5936 175_001_scaffold_5936
Genus: Actinomyces (66.67%)
3 1166 bp 57.29 5.53 55.83
NECEvent2014_5_2_scaffold_5631 175_001_scaffold_5631
Species: Actinomyces coleocanis (50%)
2 1221 bp 59.30 9.58 55.77
NECEvent2014_5_2_scaffold_3062 175_001_scaffold_3062
Genus: Actinomyces (66.67%)
3 1909 bp 58.30 5.58 54.22
NECEvent2014_5_2_scaffold_4585 175_001_scaffold_4585
Species: Chlamydia trachomatis (100%)
1 1422 bp 47.54 7.28 52.95
NECEvent2014_5_2_scaffold_2188 175_001_scaffold_2188
Species: Propionibacterium sp. KPL2005 (100%)
2 2437 bp 51.05 4.86 52.44
Displaying items 751-800 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.