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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

some extra single copy genes

Displaying items 151-200 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_4407 175_001_scaffold_4407
Species: BJP_08E140C01_Actinomycetales_70_11 (100%)
1 1465 bp 58.16 5.73 99.73
NECEvent2014_5_2_scaffold_4479 175_001_scaffold_4479
Species: Propionibacterium sp. KPL1852 (100%)
1 1447 bp 61.64 5.39 99.72
NECEvent2014_5_2_scaffold_6624 175_001_scaffold_6624
Species: Actinomyces sp. oral taxon 448 (100%)
1 1065 bp 55.21 5.35 99.72
NECEvent2014_5_2_scaffold_6680 175_001_scaffold_6680
Species: Propionibacterium propionicum (100%)
1 1056 bp 57.39 6.53 99.72
NECEvent2014_5_2_scaffold_2812 175_001_scaffold_2812
Species: Xylanimonas cellulosilytica (66.67%)
3 2031 bp 59.23 6.50 99.70
NECEvent2014_5_2_scaffold_5114 175_001_scaffold_5114
Species: Actinomyces sp. ICM39 (50%)
2 1312 bp 61.36 6.40 99.70
NECEvent2014_5_2_scaffold_1762 175_001_scaffold_1762
Species: Actinomyces sp. ICM47 (50%)
4 2886 bp 61.40 6.29 99.69
NECEvent2014_5_2_scaffold_5374 175_001_scaffold_5374
Species: Actinomyces turicensis (100%)
1 1261 bp 63.44 5.95 99.68
NECEvent2014_5_2_scaffold_5649 175_001_scaffold_5649
Species: Actinomyces odontolyticus (100%)
1 1216 bp 62.75 6.41 99.67
NECEvent2014_5_2_scaffold_5724 175_001_scaffold_5724
Species: Actinomyces turicensis (100%)
1 1204 bp 61.63 3.99 99.67
NECEvent2014_5_2_scaffold_5777 175_001_scaffold_5777
Species: Propionibacterium sp. KPL1838 (100%)
1 1195 bp 61.17 5.40 99.67
NECEvent2014_5_2_scaffold_1942 175_001_scaffold_1942
Genus: Actinomyces (66.67%)
3 2682 bp 63.39 4.92 99.66
NECEvent2014_5_2_scaffold_6768 175_001_scaffold_6768
Species: Propionimicrobium lymphophilum (100%)
1 1045 bp 54.07 5.02 99.62
NECEvent2014_5_2_scaffold_1096 175_001_scaffold_1096
Species: Actinomyces sp. oral taxon 181 (50%)
4 4135 bp 58.79 5.73 99.61
NECEvent2014_5_2_scaffold_7033 175_001_scaffold_7033
Species: Propionibacterium sp. DORA_15 (100%)
1 1012 bp 51.78 6.52 99.60
NECEvent2014_5_2_scaffold_5678 175_001_scaffold_5678
Species: Actinomyces sp. oral taxon 181 (50%)
2 1211 bp 62.10 5.95 99.59
NECEvent2014_5_2_scaffold_3956 175_001_scaffold_3956
Species: Actinomyces turicensis (66.67%)
3 1588 bp 62.15 7.18 99.56
NECEvent2014_5_2_scaffold_1936 175_001_scaffold_1936
Species: Actinomyces neuii (50%)
2 2685 bp 61.27 6.87 99.55
NECEvent2014_5_2_scaffold_1676 175_001_scaffold_1676
Genus: Actinomyces (75%)
4 3017 bp 58.93 6.21 99.54
NECEvent2014_5_2_scaffold_3522 175_001_scaffold_3522
Genus: Propionibacterium (66.67%)
3 1728 bp 55.67 6.42 99.48
NECEvent2014_5_2_scaffold_3769 175_001_scaffold_3769
Genus: Actinomyces (100%)
3 1647 bp 61.63 4.92 99.45
NECEvent2014_5_2_scaffold_3322 175_001_scaffold_3322
Genus: Actinomyces (100%)
3 1801 bp 57.86 5.83 99.44
NECEvent2014_5_2_scaffold_6641 175_001_scaffold_6641
Species: Propionibacterium sp. HGH0353 (100%)
2 1062 bp 62.05 5.08 99.44
NECEvent2014_5_2_scaffold_4498 175_001_scaffold_4498
Species: Varibaculum cambriense (100%)
2 1443 bp 57.59 7.80 99.38
NECEvent2014_5_2_scaffold_2507 175_001_scaffold_2507
Species: Chlamydia trachomatis (50%)
2 2210 bp 61.54 7.60 99.37
NECEvent2014_5_2_scaffold_2513 175_001_scaffold_2513
Genus: Actinomyces (100%)
3 2207 bp 60.35 7.34 99.37
NECEvent2014_5_2_scaffold_2696 175_001_scaffold_2696
Species: Actinomyces cardiffensis (66.67%)
3 2808 bp 60.79 6.62 99.36
NECEvent2014_5_2_scaffold_1565 175_001_scaffold_1565
Species: Actinomyces sp. oral taxon 181 (50%)
2 3162 bp 60.18 6.78 99.34
NECEvent2014_5_2_scaffold_5072 175_001_scaffold_5072
Species: Dermabacter sp. HFH0086 (100%)
2 1320 bp 48.79 4.66 99.32
NECEvent2014_5_2_scaffold_5097 175_001_scaffold_5097
Species: Actinomyces europaeus (50%)
2 1314 bp 57.91 6.05 99.32
NECEvent2014_5_2_scaffold_1679 175_001_scaffold_1679
Genus: Actinomyces (80%)
5 3012 bp 59.40 6.27 99.30
NECEvent2014_5_2_scaffold_4040 175_001_scaffold_4040
Species: Actinomyces sp. oral taxon 181 (50%)
2 1565 bp 58.40 8.34 99.30
NECEvent2014_5_2_scaffold_5342 175_001_scaffold_5342
Species: Actinomyces sp. oral taxon 178 (100%)
1 1269 bp 64.14 6.15 99.29
NECEvent2014_5_2_scaffold_4821 175_001_scaffold_4821
Order: Micrococcales (66.67%)
3 1369 bp 61.65 6.46 99.27
NECEvent2014_5_2_scaffold_2348 175_001_scaffold_2348
Species: Arcanobacterium haemolyticum (100%)
2 2315 bp 56.46 7.32 99.27
NECEvent2014_5_2_scaffold_4392 175_001_scaffold_4392
Genus: Actinomyces (100%)
3 1469 bp 59.84 5.92 99.25
NECEvent2014_5_2_scaffold_3011 175_001_scaffold_3011
Species: Corynebacterium sp. ATCC 6931 (50%)
2 1929 bp 54.85 6.45 99.22
NECEvent2014_5_2_scaffold_1764 175_001_scaffold_1764
Domain: Bacteria (66.67%)
3 2885 bp 61.21 6.14 99.20
NECEvent2014_5_2_scaffold_6246 175_001_scaffold_6246
Species: Actinomyces sp. S6-Spd3 (50%)
2 1119 bp 60.50 5.09 99.20
NECEvent2014_5_2_scaffold_3509 175_001_scaffold_3509
Species: Microbacterium azadirachtae (50%)
2 1733 bp 56.32 7.10 99.19
NECEvent2014_5_2_scaffold_4410 175_001_scaffold_4410
Species: Actinomyces europaeus (50%)
2 1465 bp 61.64 6.76 99.11
NECEvent2014_5_2_scaffold_1836 175_001_scaffold_1836
Genus: Actinomyces (75%)
4 2809 bp 63.08 6.73 99.11
NECEvent2014_5_2_scaffold_4702 175_001_scaffold_4702
Species: Actinomyces cardiffensis (100%)
1 1396 bp 61.68 4.08 99.07
NECEvent2014_5_2_scaffold_1531 175_001_scaffold_1531
Species: Actinomyces cardiffensis (50%)
2 3216 bp 62.44 6.67 99.07
NECEvent2014_5_2_scaffold_2436 175_001_scaffold_2436
Order: Micrococcales (66.67%)
3 2250 bp 58.04 8.00 99.07
NECEvent2014_5_2_scaffold_3320 175_001_scaffold_3320
Species: Actinomyces turicensis (50%)
2 1802 bp 60.82 6.49 99.06
NECEvent2014_5_2_scaffold_3979 175_001_scaffold_3979
Species: Chlamydia trachomatis (50%)
2 1581 bp 63.31 6.64 99.05
NECEvent2014_5_2_scaffold_2398 175_001_scaffold_2398
Genus: Actinomyces (66.67%)
3 2278 bp 60.54 7.64 99.03
NECEvent2014_5_2_scaffold_3983 175_001_scaffold_3983
Species: Actinomyces turicensis (100%)
1 1579 bp 59.28 5.32 98.99
NECEvent2014_5_2_scaffold_2449 175_001_scaffold_2449
Species: Actinomyces sp. S6-Spd3 (50%)
2 2243 bp 61.08 5.62 98.97
Displaying items 151-200 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.