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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

some extra single copy genes

Displaying items 151-200 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_4363 175_001_scaffold_4363
Species: Actinomyces graevenitzii (50%)
2 1479 bp 59.03 5.58 93.31
NECEvent2014_5_2_scaffold_2357 175_001_scaffold_2357
Domain: Bacteria (66.67%)
3 2309 bp 51.62 5.59 84.41
NECEvent2014_5_2_scaffold_6570 175_001_scaffold_6570
Species: Propionibacterium humerusii (50%)
2 1072 bp 58.68 5.60 31.90
NECEvent2014_5_2_scaffold_5571 175_001_scaffold_5571
Species: Actinomyces sp. oral taxon 181 (100%)
1 1232 bp 57.63 5.60 75.00
NECEvent2014_5_2_scaffold_5410 175_001_scaffold_5410
Species: Actinomyces sp. oral taxon 181 (50%)
2 1256 bp 59.63 5.61 83.12
NECEvent2014_5_2_scaffold_2449 175_001_scaffold_2449
Species: Actinomyces sp. S6-Spd3 (50%)
2 2243 bp 61.08 5.62 98.97
NECEvent2014_5_2_scaffold_2630 175_001_scaffold_2630
Genus: Propionibacterium (66.67%)
3 2136 bp 59.55 5.62 85.25
NECEvent2014_5_2_scaffold_5592 175_001_scaffold_5592
Species: Actinomyces europaeus (50%)
2 1228 bp 63.84 5.62 100.16
NECEvent2014_5_2_scaffold_1776 175_001_scaffold_1776
Species: Propionibacterium sp. KPL1852 (100%)
2 2875 bp 62.40 5.63 91.72
NECEvent2014_5_2_scaffold_3935 175_001_scaffold_3935
Species: Actinomyces sp. oral taxon 448 (100%)
2 1595 bp 62.01 5.64 101.00
NECEvent2014_5_2_scaffold_2989 175_001_scaffold_2989
Species: Actinomyces sp. oral taxon 180 (50%)
2 1939 bp 60.65 5.65 84.94
NECEvent2014_5_2_scaffold_4539 175_001_scaffold_4539
Species: Actinomyces sp. ICM47 (100%)
2 1433 bp 60.64 5.65 89.60
NECEvent2014_5_2_scaffold_7064 175_001_scaffold_7064
Species: Propionibacterium sp. KPL1852 (100%)
2 1009 bp 59.37 5.65 59.46
NECEvent2014_5_2_scaffold_3688 175_001_scaffold_3688
Genus: Actinomyces (75%)
4 1674 bp 57.65 5.65 80.47
NECEvent2014_5_2_scaffold_1859 175_001_scaffold_1859
Order: Propionibacteriales (50%)
4 2782 bp 56.51 5.66 88.96
NECEvent2014_5_2_scaffold_2657 175_001_scaffold_2657
Species: Corynebacterium singulare (50%)
2 2121 bp 57.43 5.66 86.85
NECEvent2014_5_2_scaffold_2490 175_001_scaffold_2490
Species: Actinomyces georgiae (50%)
2 2223 bp 62.08 5.67 99.87
NECEvent2014_5_2_scaffold_2335 175_001_scaffold_2335
Genus: Actinomyces (66.67%)
3 2327 bp 59.35 5.67 96.43
NECEvent2014_5_2_scaffold_6695 175_001_scaffold_6695
Species: Propionibacterium sp. KPL2005 (100%)
1 1054 bp 59.68 5.69 72.58
NECEvent2014_5_2_scaffold_3806 175_001_scaffold_3806
Species: Actinomyces turicensis (100%)
1 1635 bp 59.76 5.69 74.13
NECEvent2014_5_2_scaffold_6499 175_001_scaffold_6499
Species: Dermabacter hominis (50%)
2 1081 bp 61.05 5.69 86.86
NECEvent2014_5_2_scaffold_6897 175_001_scaffold_6897
Species: Actinomyces odontolyticus (100%)
1 1029 bp 59.48 5.69 89.50
NECEvent2014_5_2_scaffold_5680 175_001_scaffold_5680
Species: Microbacterium mangrovi (100%)
1 1210 bp 61.74 5.70 99.92
NECEvent2014_5_2_scaffold_7128 175_001_scaffold_7128
Species: Propionibacterium acidipropionici (50%)
2 1000 bp 58.60 5.70 78.60
NECEvent2014_5_2_scaffold_2924 175_001_scaffold_2924
Species: Mobiluncus curtisii (50%)
2 1973 bp 58.08 5.70 81.35
NECEvent2014_5_2_scaffold_5092 175_001_scaffold_5092
Species: Propionibacterium sp. KPL1852 (100%)
1 1316 bp 61.78 5.70 99.85
NECEvent2014_5_2_scaffold_4836 175_001_scaffold_4836
Species: Actinomyces turicensis (50%)
2 1366 bp 59.96 5.71 100.15
NECEvent2014_5_2_scaffold_2095 175_001_scaffold_2095
Genus: Actinomyces (100%)
3 2524 bp 60.38 5.71 93.19
NECEvent2014_5_2_scaffold_4715 175_001_scaffold_4715
Species: Propionibacterium sp. KPL2005 (50%)
2 1393 bp 56.78 5.71 97.56
NECEvent2014_5_2_scaffold_5390 175_001_scaffold_5390
Class: Actinobacteria (66.67%)
3 1257 bp 54.97 5.73 75.90
NECEvent2014_5_2_scaffold_4406 175_001_scaffold_4406
Species: Propionibacterium sp. KPL1852 (50%)
2 1465 bp 58.09 5.73 89.49
NECEvent2014_5_2_scaffold_4407 175_001_scaffold_4407
Species: BJP_08E140C01_Actinomycetales_70_11 (100%)
1 1465 bp 58.16 5.73 99.73
NECEvent2014_5_2_scaffold_1096 175_001_scaffold_1096
Species: Actinomyces sp. oral taxon 181 (50%)
4 4135 bp 58.79 5.73 99.61
NECEvent2014_5_2_scaffold_888 175_001_scaffold_888
Species: Actinomyces sp. S6-Spd3 (50%)
4 4947 bp 61.45 5.73 95.09
NECEvent2014_5_2_scaffold_4761 175_001_scaffold_4761
Species: Actinomyces sp. S6-Spd3 (50%)
2 1384 bp 57.66 5.74 47.90
NECEvent2014_5_2_scaffold_2717 175_001_scaffold_2717
Species: Actinomyces cardiffensis (66.67%)
3 2089 bp 59.60 5.74 88.46
NECEvent2014_5_2_scaffold_3315 175_001_scaffold_3315
Class: Actinobacteria (66.67%)
3 1803 bp 52.63 5.74 64.56
NECEvent2014_5_2_scaffold_5741 175_001_scaffold_5741
Species: Propionibacterium sp. HGH0353 (100%)
1 1201 bp 55.79 5.75 42.46
NECEvent2014_5_2_scaffold_3552 175_001_scaffold_3552
Species: Propionimicrobium lymphophilum (50%)
2 1719 bp 61.95 5.76 88.48
NECEvent2014_5_2_scaffold_6788 175_001_scaffold_6788
Species: Brevibacterium linens (50%)
2 1042 bp 57.39 5.76 65.64
NECEvent2014_5_2_scaffold_2580 175_001_scaffold_2580
Class: Actinobacteria (66.67%)
3 2161 bp 56.69 5.76 81.91
NECEvent2014_5_2_scaffold_6089 175_001_scaffold_6089
Species: Austwickia chelonae (50%)
2 1141 bp 67.13 5.78 100.18
NECEvent2014_5_2_scaffold_2698 175_001_scaffold_2698
Species: Propionimicrobium lymphophilum (50%)
2 2100 bp 59.81 5.79 90.57
NECEvent2014_5_2_scaffold_6274 175_001_scaffold_6274
Species: Propionibacterium sp. KPL1852 (66.67%)
3 1114 bp 60.59 5.79 79.71
NECEvent2014_5_2_scaffold_5793 175_001_scaffold_5793
Species: Actinomyces sp. oral taxon 181 (100%)
1 1192 bp 64.68 5.79 78.02
NECEvent2014_5_2_scaffold_6847 175_001_scaffold_6847
Species: Varibaculum cambriense (100%)
1 1036 bp 54.73 5.79 99.90
NECEvent2014_5_2_scaffold_3422 175_001_scaffold_3422
Genus: Corynebacterium (66.67%)
3 1763 bp 56.27 5.79 102.10
NECEvent2014_5_2_scaffold_3169 175_001_scaffold_3169
Genus: Actinomyces (66.67%)
3 1864 bp 61.16 5.79 92.60
NECEvent2014_5_2_scaffold_5648 175_001_scaffold_5648
Species: Actinomyces georgiae (50%)
2 1216 bp 55.59 5.80 25.90
NECEvent2014_5_2_scaffold_2713 175_001_scaffold_2713
Species: Propionibacterium sp. KPL1838 (50%)
2 2091 bp 60.88 5.81 49.93
Displaying items 151-200 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.