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NECEvent2014_5_2_Actinomyces_60_7

NECEvent2014_5_2_Actinomyces_59_7
In projects: NECEvent2014_5_2

Consensus taxonomy: Actinomyces  →  Actinomycetales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Description

some extra single copy genes

Displaying items 151-200 of 813 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_2_scaffold_493 175_001_scaffold_493
Species: Arthrobacter albus (50%)
8 8974 bp 56.46 7.39 95.20
NECEvent2014_5_2_scaffold_3101 175_001_scaffold_3101
Species: Propionibacterium freudenreichii (50%)
2 1888 bp 59.11 7.39 85.01
NECEvent2014_5_2_scaffold_6128 175_001_scaffold_6128
Species: Actinomyces sp. ICM47 (50%)
2 1136 bp 60.39 7.39 98.77
NECEvent2014_5_2_scaffold_1714 175_001_scaffold_1714
Genus: Actinomyces (80%)
5 2969 bp 58.71 7.38 87.71
NECEvent2014_5_2_scaffold_3252 175_001_scaffold_3252
Class: Actinobacteria (66.67%)
3 1830 bp 61.26 7.38 100.98
NECEvent2014_5_2_scaffold_1236 175_001_scaffold_1236
Order: Actinomycetales (50%)
4 3762 bp 61.54 7.38 93.70
NECEvent2014_5_2_scaffold_3154 175_001_scaffold_3154
Species: Actinomyces sp. S6-Spd3 (50%)
2 1870 bp 60.48 7.38 93.85
NECEvent2014_5_2_scaffold_3574 175_001_scaffold_3574
Species: Actinomyces sp. oral taxon 181 (50%)
2 1713 bp 61.30 7.36 94.57
NECEvent2014_5_2_scaffold_665 175_001_scaffold_665
Genus: Actinomyces (50%)
8 6696 bp 61.04 7.35 94.46
NECEvent2014_5_2_scaffold_4947 175_001_scaffold_4947
Class: Actinobacteria (66.67%)
3 1347 bp 60.73 7.35 100.22
NECEvent2014_5_2_scaffold_657 175_001_scaffold_657
Species: Actinomyces turicensis (83.33%)
6 6805 bp 50.95 7.34 95.14
NECEvent2014_5_2_scaffold_2513 175_001_scaffold_2513
Genus: Actinomyces (100%)
3 2207 bp 60.35 7.34 99.37
NECEvent2014_5_2_scaffold_6072 175_001_scaffold_6072
Species: Propionibacterium propionicum (100%)
1 1145 bp 59.39 7.34 98.25
NECEvent2014_5_2_scaffold_2081 175_001_scaffold_2081
Genus: Actinomyces (66.67%)
3 2536 bp 59.90 7.33 86.00
NECEvent2014_5_2_scaffold_5025 175_001_scaffold_5025
Species: Atopobium sp. ICM58 (100%)
1 1331 bp 58.45 7.33 77.54
NECEvent2014_5_2_scaffold_4218 175_001_scaffold_4218
Species: Actinomyces naeslundii (50%)
2 1515 bp 62.44 7.33 95.64
NECEvent2014_5_2_scaffold_5022 175_001_scaffold_5022
Species: Beutenbergia cavernae (50%)
2 1332 bp 59.08 7.32 92.12
NECEvent2014_5_2_scaffold_2348 175_001_scaffold_2348
Species: Arcanobacterium haemolyticum (100%)
2 2315 bp 56.46 7.32 99.27
NECEvent2014_5_2_scaffold_2097 175_001_scaffold_2097
Species: Actinomyces sp. S6-Spd3 (100%)
1 2522 bp 59.08 7.32 99.92
NECEvent2014_5_2_scaffold_5445 175_001_scaffold_5445
Species: Propionibacterium sp. KPL2005 (100%)
1 1251 bp 62.83 7.31 52.04
NECEvent2014_5_2_scaffold_788 175_001_scaffold_788
Genus: Actinomyces (83.33%)
6 5584 bp 59.12 7.31 95.52
NECEvent2014_5_2_scaffold_5010 175_001_scaffold_5010
Species: Actinomyces cardiffensis (50%)
2 1334 bp 59.82 7.31 99.85
NECEvent2014_5_2_scaffold_6592 175_001_scaffold_6592
Species: Actinomyces sp. oral taxon 172 (100%)
1 1068 bp 60.86 7.30 87.64
NECEvent2014_5_2_scaffold_4265 175_001_scaffold_4265
Genus: Actinomyces (66.67%)
3 1502 bp 57.39 7.29 95.27
NECEvent2014_5_2_scaffold_1219 175_001_scaffold_1219
Order: Actinomycetales (66.67%)
3 3807 bp 58.68 7.29 96.06
NECEvent2014_5_2_scaffold_3847 175_001_scaffold_3847
Species: Actinomyces sp. oral taxon 172 (100%)
1 1625 bp 59.63 7.29 96.74
NECEvent2014_5_2_scaffold_1037 175_001_scaffold_1037
Species: Actinomyces neuii (100%)
5 4320 bp 61.74 7.29 92.78
NECEvent2014_5_2_scaffold_4585 175_001_scaffold_4585
Species: Chlamydia trachomatis (100%)
1 1422 bp 47.54 7.28 52.95
NECEvent2014_5_2_scaffold_1882 175_001_scaffold_1882
Class: Actinobacteria (100%)
3 2760 bp 55.47 7.28 91.74
NECEvent2014_5_2_scaffold_5078 175_001_scaffold_5078
Species: Actinomyces sp. oral taxon 172 (50%)
2 1318 bp 62.06 7.28 99.92
NECEvent2014_5_2_scaffold_2479 175_001_scaffold_2479
Order: Actinomycetales (66.67%)
3 2227 bp 57.12 7.27 90.79
NECEvent2014_5_2_scaffold_1570 175_001_scaffold_1570
Species: Actinomyces cardiffensis (50%)
4 3157 bp 62.02 7.27 95.31
NECEvent2014_5_2_scaffold_914 175_001_scaffold_914
Genus: Actinomyces (100%)
4 4833 bp 60.44 7.26 95.28
NECEvent2014_5_2_scaffold_875 175_001_scaffold_875
Species: Actinomyces neuii (60%)
5 5000 bp 58.44 7.26 86.22
NECEvent2014_5_2_scaffold_1469 175_001_scaffold_1469
Genus: Actinomyces (100%)
4 3312 bp 59.30 7.25 89.76
NECEvent2014_5_2_scaffold_3270 175_001_scaffold_3270
Genus: Actinomyces (100%)
3 1820 bp 59.84 7.25 94.95
NECEvent2014_5_2_scaffold_4326 175_001_scaffold_4326
Species: Actinomyces sp. ICM54 (100%)
1 1489 bp 63.33 7.25 85.43
NECEvent2014_5_2_scaffold_3172 175_001_scaffold_3172 3 1863 bp 60.28 7.25 78.21
NECEvent2014_5_2_scaffold_6382 175_001_scaffold_6382
Species: Actinomyces sp. ICM39 (100%)
1 1097 bp 59.34 7.25 65.63
NECEvent2014_5_2_scaffold_912 175_001_scaffold_912
Genus: Actinomyces (66.67%)
3 4845 bp 59.59 7.24 89.78
NECEvent2014_5_2_scaffold_960 175_001_scaffold_960
Species: Varibaculum cambriense (50%)
4 4638 bp 59.57 7.24 98.45
NECEvent2014_5_2_scaffold_5357 175_001_scaffold_5357
Species: Sanguibacter keddieii (50%)
2 1264 bp 62.74 7.24 98.50
NECEvent2014_5_2_scaffold_1788 175_001_scaffold_1788
Order: Actinomycetales (66.67%)
6 2864 bp 49.76 7.23 84.22
NECEvent2014_5_2_scaffold_2733 175_001_scaffold_2733
Order: Actinomycetales (66.67%)
3 2079 bp 59.11 7.22 85.57
NECEvent2014_5_2_scaffold_982 175_001_scaffold_982
Class: Actinobacteria (50%)
6 4569 bp 56.71 7.22 87.37
NECEvent2014_5_2_scaffold_1259 175_001_scaffold_1259
Species: Beutenbergia cavernae (50%)
2 3697 bp 57.15 7.22 92.91
NECEvent2014_5_2_scaffold_2172 175_001_scaffold_2172
Species: Actinomyces europaeus (50%)
2 2451 bp 63.53 7.22 97.06
NECEvent2014_5_2_scaffold_6975 175_001_scaffold_6975
Species: Propionibacterium sp. KPL1852 (50%)
2 1019 bp 60.16 7.21 93.33
NECEvent2014_5_2_scaffold_1747 175_001_scaffold_1747
Species: Streptomyces sp. CNQ-509 (66.67%)
3 2914 bp 57.31 7.21 91.11
NECEvent2014_5_2_scaffold_4277 175_001_scaffold_4277
Genus: Actinomyces (66.67%)
3 1500 bp 57.20 7.20 100.60
Displaying items 151-200 of 813 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.