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NECEvent2014_5_2_scaffold_4734_3

Organism: NECEvent2014_5_2_Pseudomonas_aeruginosa-rel_66_6_partial

partial RP 39 / 55 MC: 1 BSCG 35 / 51 ASCG 9 / 38 MC: 1
Location: comp(999..1388)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoS n=121 Tax=Pseudomonas RepID=RPOS_PSEAE similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 129.0
  • Bit_score: 252
  • Evalue 2.40e-64
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 129.0
  • Bit_score: 252
  • Evalue 6.80e-65
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aer similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 129.0
  • Bit_score: 252
  • Evalue 3.40e-64

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 390
CTGCTGGAGAAGCCGGTCGCCGAGGTCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTGGATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTGGCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGGAAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAGATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA
PROTEIN sequence
Length: 130
LLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLLDTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLREILEKNGLSSDALFQ*