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NECEvent2014_5_3_scaffold_2888_2

Organism: NECEvent2014_5_3_Pseudomonas_aeruginosa_rel_66_7

near complete RP 49 / 55 MC: 3 BSCG 43 / 51 ASCG 13 / 38 MC: 2
Location: 681..1226

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 factor, ECF subfamily protein n=131 Tax=Pseudomonas RepID=M9SCQ2_PSEAI similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 181.0
  • Bit_score: 354
  • Evalue 8.20e-95
  • rbh
RNA polymerase subunit sigma-24 similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 181.0
  • Bit_score: 354
  • Evalue 2.30e-95
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:AHB57832.1}; TaxID=1415629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomon similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 181.0
  • Bit_score: 354
  • Evalue 1.20e-94

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Taxonomy

Pseudomonas aeruginosa → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGAGCGATTCGCGGCAAAGCGCGATGGTGAAGCTGTTCCTCGCCTCCTACGACGACTTCAAGGCGCGCCTGAAACGGCGCCTGGGCTCCGAGGACCTGGCGTGCGACGTGCTGCACGAAACCTACCTGAGAGTCGACCGGCTGGATGATGCCCTGGAGGTCAAGAAGCCCCAGGCCTACCTGTTCCGTATTGCCCTGAACATTGCCGCCGACCGCCGCGAGGGCGACGCCCGCCTGCTCACCGGGGAGGAGGTGGCGGAGCTGTTGCAGGTGGCCGACGAAGGCCTCGACCCGGAGCGCATCGTCGGCGGTCACGCCGAGATCCGTCGCCTGCTGGAGGCGCTCTGCGAACTGCCGGCGCGGCGCCGGCAGATTCTCATCGCCTCGCGCCTGGAGGAGACGCCGCATGCGGAAATCTCCCGTCGCTTCGGCATTTCCACCCGCACCGTGGAGAAGGAACTCAAGGCCGCCCTGTGGTTCTGCGCGGAGCGCCTGGAAAGAAAAGTCATCCAGAGGTTCGGTCCCGGGGCCGGAAAACCGTCATAA
PROTEIN sequence
Length: 182
MSDSRQSAMVKLFLASYDDFKARLKRRLGSEDLACDVLHETYLRVDRLDDALEVKKPQAYLFRIALNIAADRREGDARLLTGEEVAELLQVADEGLDPERIVGGHAEIRRLLEALCELPARRRQILIASRLEETPHAEISRRFGISTRTVEKELKAALWFCAERLERKVIQRFGPGAGKPS*