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NECEvent2014_5_7_scaffold_7_7

Organism: NECEvent2014_5_7_Escherichia_coli_50_56_partial

partial RP 29 / 55 MC: 4 BSCG 28 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: comp(7961..8626)

Top 3 Functional Annotations

Value Algorithm Source
GntR-family transcriptional regulator n=93 Tax=Escherichia coli RepID=D3GRI3_ECO44 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 221.0
  • Bit_score: 432
  • Evalue 2.20e-118
  • rbh
yncC; putative DNA-binding transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 221.0
  • Bit_score: 432
  • Evalue 6.30e-119
Colanic acid/biofilm transcriptional regulator {ECO:0000313|EMBL:EZA00475.1}; TaxID=1446551 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.; similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 221.0
  • Bit_score: 432
  • Evalue 3.10e-118

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGCCTGGAACGGAAAAAATGAAACATGTCAGTTTGACTCTGCAGGTTGAGAATGACCTGAAACATCAGCTTAGTATTGGCGCACTAAAACCTGGCGCACGCCTGATTACTAAAAATCTGGCGGAGCAATTAGGTATGAGTATTACACCTGTGCGTGAAGCATTATTACGTCTGGTTTCGGTGAATGCGCTTTCTGTCGCACCAGCGCAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAGCTGGAATTAATGGCAGTTACTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTGGCGGAACTCGAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGCGAACAGGCTATTTCGCTTAGCGATTTATCATCGTTCAAATATGCCCATCCTGTGTGAGATGATTGAGCAACTGTGGGTCAGGATGGGACCTGGTTTACATTATCTCTATGAAGCGATTAATCCAGCGGAATTACGGGAGCGTATAGAAAACTATCGTCTATTACTCGCCGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAATCGTTAA
PROTEIN sequence
Length: 222
MPGTEKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVPEVGKRQLDEINRIRYELELMAVTLAVENLTPQDLAELEELLEKLQQAQEKGDMEQIINANRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPAELRERIENYRLLLAALKAKDKEGCRHCLAEIMQQNIAILYQQYNR*