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NECEvent2014_5_7_scaffold_754_22

Organism: NECEvent2014_5_7_Escherichia_coli_50_56_partial

partial RP 29 / 55 MC: 4 BSCG 28 / 51 MC: 2 ASCG 10 / 38 MC: 1
Location: 14370..14570

Top 3 Functional Annotations

Value Algorithm Source
Cold shock-like protein CspF n=323 Tax=Escherichia RepID=CSPF_ECOL6 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 66.0
  • Bit_score: 133
  • Evalue 6.40e-29
putative cold shock protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 66.0
  • Bit_score: 133
  • Evalue 1.80e-29
RNA chaperone, negative regulator of cspA transcription {ECO:0000313|EMBL:EMX19399.1}; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Esch similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 66.0
  • Bit_score: 133
  • Evalue 8.90e-29

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 201
ATGACAGGAATTGTCAAAACCTTTGACGGCAAAAGCGGCAAGGGTCTTATCACCCCATCCGATGGTCGTATCGATGTCCAGCTTCATGTTTCAGCGCTCAATCTCCGCGATGCAGAAGAAATTACCACCGGATTACGCGTGGAATTTTGCCGGATAAATGGTCTGCGTGGCCCTTCAGCTGCCAATGTTTACCTTTCATGA
PROTEIN sequence
Length: 67
MTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEEITTGLRVEFCRINGLRGPSAANVYLS*