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NECEvent2014_5_8_Eggerthella_1_3_5FAA-rel_64_6

NECEvent2014_5_8_Eggerthella_64_6
In projects: NECEvent2014_5_8

Consensus taxonomy: Eggerthella  →  Eggerthellales  →  Coriobacteriia  →  Actinobacteria  →  Bacteria

Description

fragments of PC.diff merged with Eggerthella as in other (ESOM supported)

Displaying items 501-550 of 1015 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_5_8_scaffold_4190 175_008_scaffold_4190
Species: Eggerthella lenta (50%)
2 1851 bp 63.97 6.56 89.14
NECEvent2014_5_8_scaffold_3046 175_008_scaffold_3046
Species: Eggerthella lenta (100%)
4 2699 bp 67.65 5.34 89.14
NECEvent2014_5_8_scaffold_2266 175_008_scaffold_2266
Species: Peptoclostridium difficile (50%)
4 3755 bp 67.94 5.99 89.16
NECEvent2014_5_8_scaffold_5547 175_008_scaffold_5547
Genus: Propionibacterium (66.67%)
3 1292 bp 63.62 5.80 89.16
NECEvent2014_5_8_scaffold_2559 175_008_scaffold_2559
Species: Eggerthella sp. HGA1 (100%)
4 3248 bp 64.62 5.08 89.22
NECEvent2014_5_8_scaffold_3532 175_008_scaffold_3532
Species: Eggerthella lenta (50%)
4 2276 bp 67.27 7.18 89.24
NECEvent2014_5_8_scaffold_1851 175_008_scaffold_1851
Species: Eggerthella lenta (100%)
5 4581 bp 62.82 6.55 89.26
NECEvent2014_5_8_scaffold_2279 175_008_scaffold_2279
Genus: Eggerthella (80%)
5 3736 bp 68.58 5.90 89.29
NECEvent2014_5_8_scaffold_1665 175_008_scaffold_1665
Species: Eggerthella lenta (75%)
4 5096 bp 64.66 8.15 89.31
NECEvent2014_5_8_scaffold_3935 175_008_scaffold_3935
Species: Eggerthella sp. HGA1 (50%)
2 2002 bp 72.38 5.84 89.31
NECEvent2014_5_8_scaffold_2808 175_008_scaffold_2808
Species: Eggerthella sp. HGA1 (50%)
2 2975 bp 67.23 6.45 89.34
NECEvent2014_5_8_scaffold_2161 175_008_scaffold_2161
Species: Eggerthella lenta (100%)
3 3952 bp 64.98 6.30 89.35
NECEvent2014_5_8_scaffold_1640 175_008_scaffold_1640
Order: Eggerthellales (71.43%)
7 5156 bp 57.76 5.67 89.37
NECEvent2014_5_8_scaffold_1930 175_008_scaffold_1930
Genus: Eggerthella (60%)
5 4407 bp 64.56 7.35 89.45
NECEvent2014_5_8_scaffold_6342 175_008_scaffold_6342
Species: Eggerthella sp. HGA1 (100%)
2 1073 bp 67.94 6.43 89.47
NECEvent2014_5_8_scaffold_2779 175_008_scaffold_2779
Species: Eggerthella sp. HGA1 (75%)
4 3001 bp 66.34 4.80 89.47
NECEvent2014_5_8_scaffold_4146 175_008_scaffold_4146
Species: Propionibacterium sp. HGH0353 (50%)
2 1871 bp 66.92 4.49 89.47
NECEvent2014_5_8_scaffold_5681 175_008_scaffold_5681
Species: Eggerthella lenta (66.67%)
3 1254 bp 64.99 6.94 89.47
NECEvent2014_5_8_scaffold_2185 175_008_scaffold_2185
Species: Eggerthella sp. HGA1 (66.67%)
3 3896 bp 63.32 6.31 89.55
NECEvent2014_5_8_scaffold_1887 175_008_scaffold_1887
Species: Peptoclostridium difficile (60%)
5 4509 bp 66.00 5.82 89.55
NECEvent2014_5_8_scaffold_2877 175_008_scaffold_2877
Species: Eggerthella lenta (100%)
2 2904 bp 65.43 6.35 89.57
NECEvent2014_5_8_scaffold_4669 175_008_scaffold_4669
Genus: Eggerthella (66.67%)
3 1634 bp 64.26 5.05 89.60
NECEvent2014_5_8_scaffold_3190 175_008_scaffold_3190
Species: Eggerthella lenta (100%)
2 2561 bp 66.89 6.09 89.61
NECEvent2014_5_8_scaffold_3215 175_008_scaffold_3215
Species: Eggerthella sp. HGA1 (100%)
4 2540 bp 62.99 8.80 89.65
NECEvent2014_5_8_scaffold_2292 175_008_scaffold_2292
Species: Eggerthella sp. HGA1 (66.67%)
3 3711 bp 62.17 4.81 89.65
NECEvent2014_5_8_scaffold_3052 175_008_scaffold_3052
Species: Eggerthella lenta (50%)
4 2694 bp 69.12 5.46 89.68
NECEvent2014_5_8_scaffold_2261 175_008_scaffold_2261
Species: Eggerthella lenta (100%)
2 3760 bp 64.73 6.22 89.68
NECEvent2014_5_8_scaffold_5873 175_008_scaffold_5873
Species: Eggerthella sp. HGA1 (50%)
2 1194 bp 66.25 4.02 89.70
NECEvent2014_5_8_scaffold_2368 175_008_scaffold_2368
Species: Eggerthella lenta (60%)
5 3602 bp 65.96 5.66 89.70
NECEvent2014_5_8_scaffold_4710 175_008_scaffold_4710
Species: Eggerthella sp. HGA1 (100%)
2 1614 bp 66.05 6.69 89.78
NECEvent2014_5_8_scaffold_1838 175_008_scaffold_1838
Species: Eggerthella lenta (75%)
4 4617 bp 60.91 6.14 89.80
NECEvent2014_5_8_scaffold_5964 175_008_scaffold_5964
Species: Eggerthella lenta (100%)
2 1172 bp 61.86 6.14 89.85
NECEvent2014_5_8_scaffold_1919 175_008_scaffold_1919
Species: Eggerthella lenta (75%)
4 4441 bp 68.57 4.59 89.91
NECEvent2014_5_8_scaffold_1133 175_008_scaffold_1133
Species: Eggerthella sp. HGA1 (62.5%)
8 7490 bp 64.29 6.89 89.92
NECEvent2014_5_8_scaffold_1920 175_008_scaffold_1920
Species: Peptoclostridium difficile (50%)
4 4439 bp 62.78 5.61 89.95
NECEvent2014_5_8_scaffold_6339 175_008_scaffold_6339
Species: Peptoclostridium difficile (66.67%)
3 1073 bp 63.56 4.19 90.03
NECEvent2014_5_8_scaffold_4867 175_008_scaffold_4867
Species: Peptoclostridium difficile (75%)
4 1546 bp 68.43 6.02 90.04
NECEvent2014_5_8_scaffold_3750 175_008_scaffold_3750
Species: Eggerthella lenta (50%)
6 2912 bp 70.19 4.69 90.04
NECEvent2014_5_8_scaffold_1083 175_008_scaffold_1083
Species: Eggerthella sp. HGA1 (75%)
4 7801 bp 64.29 6.77 90.07
NECEvent2014_5_8_scaffold_2220 175_008_scaffold_2220
Genus: Eggerthella (66.67%)
3 3843 bp 63.08 5.19 90.09
NECEvent2014_5_8_scaffold_4264 175_008_scaffold_4264
Species: Eggerthella sp. HGA1 (50%)
2 1808 bp 67.20 5.23 90.10
NECEvent2014_5_8_scaffold_1430 175_008_scaffold_1430
Species: Eggerthella sp. HGA1 (50%)
6 5998 bp 62.89 6.43 90.13
NECEvent2014_5_8_scaffold_3421 175_008_scaffold_3421
Species: Eggerthella lenta (66.67%)
3 2349 bp 66.33 5.24 90.17
NECEvent2014_5_8_scaffold_3598 175_008_scaffold_3598
Species: Eggerthella lenta (100%)
3 2229 bp 67.21 6.26 90.18
NECEvent2014_5_8_scaffold_2881 175_008_scaffold_2881
Species: Eggerthella lenta (75%)
4 2897 bp 64.27 5.59 90.20
NECEvent2014_5_8_scaffold_2351 175_008_scaffold_2351
Genus: Eggerthella (80%)
5 3618 bp 64.34 5.89 90.22
NECEvent2014_5_8_scaffold_1493 175_008_scaffold_1493
Species: Peptoclostridium difficile (50%)
6 5734 bp 62.02 6.80 90.25
NECEvent2014_5_8_scaffold_2409 175_008_scaffold_2409
Species: Collinsella sp. 4_8_47FAA (50%)
4 3523 bp 64.72 5.75 90.26
NECEvent2014_5_8_scaffold_2437 175_008_scaffold_2437
Species: Eggerthella lenta (50%)
4 3470 bp 61.56 6.18 90.35
NECEvent2014_5_8_scaffold_5163 175_008_scaffold_5163
Species: Eggerthella lenta (50%)
2 1431 bp 67.02 4.72 90.36
Displaying items 501-550 of 1015 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.