ggKbase home page

NECEvent2014_5_8_scaffold_1672_4

Organism: NECEvent2014_5_8_Clostridium_sporogenes-rel_28_12

near complete RP 51 / 55 MC: 4 BSCG 51 / 51 MC: 3 ASCG 15 / 38 MC: 1
Location: comp(2995..3702)

Top 3 Functional Annotations

Value Algorithm Source
Putative RNA polymerase sigma factor SigI n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7T5G5_CLOSG similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 471
  • Evalue 4.60e-130
  • rbh
Putative RNA polymerase sigma factor SigI {ECO:0000313|EMBL:EDU36903.1}; TaxID=471871 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporo similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 235.0
  • Bit_score: 471
  • Evalue 6.40e-130
RNA polymerase, sigma 28 subunit, SigI similarity KEGG
DB: KEGG
  • Identity: 46.7
  • Coverage: 225.0
  • Bit_score: 221
  • Evalue 2.30e-55

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium sporogenes → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 708
ATGAGACTTTCTAAGATTAGAGGTGAATATATGGAGCTAGATTTTTTAAGAAAGGAAAATAGAGATAAATTCATAAAAGATAGTATGAATTTTATATATAAAACCACAAATAGGATTTGCAAAAAAAAATTAGATCGTAAAAATGATGATGAAATAAGTATTGCTCTTATAGCTTTTAATAAAGCTTGTGATACCTATGATAATAAAAAGGGAAGCTTTTTTACCTATGCCTCCGTAATAATAAAAAATTCCTTAATAGACTTTTTCAAAAAGTCAGATAGAATTCCTTATTTAATTTGGAGTGAAGATGATGACTTTAATGCTATTGATAATAATGTTTCCATAAATAATTTTAATATAGCTTCAGAAAATTCTATAAGAATGGAAGAAATAAAATTATTAAATGAAGAACTAATGAAATATAAATTATCTTTTAAAGATATTGCAGAAAGTTGTCCAAGACATAAAGATACTAGGGATAGCTTATTAAATATAGCTTTAGCTTGTATACATACTGAAACCATAGTTTCCTATTTACAAAATAAAAAACAACTCCCTGTTAAAGAGATATGTTTACTTACAAATAGTAAAAGAAAATTAATAGAAAACTGGAGAAAATATTTAATAGTACTAATTATAATATTATCTAGCGATGATTACTCCTATATTAAAGGATATCTTAATATTGAAAAGGCAGGTGATAATTGA
PROTEIN sequence
Length: 236
MRLSKIRGEYMELDFLRKENRDKFIKDSMNFIYKTTNRICKKKLDRKNDDEISIALIAFNKACDTYDNKKGSFFTYASVIIKNSLIDFFKKSDRIPYLIWSEDDDFNAIDNNVSINNFNIASENSIRMEEIKLLNEELMKYKLSFKDIAESCPRHKDTRDSLLNIALACIHTETIVSYLQNKKQLPVKEICLLTNSKRKLIENWRKYLIVLIIILSSDDYSYIKGYLNIEKAGDN*