ggKbase home page

NECEvent2014_5_8_scaffold_1299_4

Organism: NECEvent2014_5_8_Clostridium_perfringens_28_7

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 15 / 38 MC: 1
Location: comp(2652..3392)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K3T3_CLOPA similarity UNIREF
DB: UNIREF100
  • Identity: 39.5
  • Coverage: 233.0
  • Bit_score: 161
  • Evalue 1.40e-36
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 39.5
  • Coverage: 233.0
  • Bit_score: 161
  • Evalue 3.90e-37
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.; similarity UNIPROT
DB: UniProtKB
  • Identity: 39.5
  • Coverage: 233.0
  • Bit_score: 161
  • Evalue 1.90e-36

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium pasteurianum → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 741
ATGACCAATGAAGAGTTGATTAAAAAATATAATGATGGTGACAGTTCAGCTTTAGATATTTTGATAGAAAACAATGAAAAACTAGTGAAGTATGTAGTAAATAAATATTCGGTTGATAAATATCCGAGCATGGATGAAGATGATTTAATACAAGAAGGAAGAATCGGACTATATATTGCAGCAACAAAGTTTGATATAGAATCAGATTTTAAGTTTTCTACTTATGCTTTTTTCTGGATTAAGCAAAGGATAAGCAGATATGTGAAGCAAAAGAGTACATATAACGAAGTTTCTCTAAATAAAAAGATTGGTGATGATTCTAATGAAATGGAACAAATTATAGGCATAGAGGATTCAGAAATAGATAAGGTTGAAGATACATTATGCAATAAGAATCTTAGGACAAGCCTTCAATTTTTAATTAATCATTACCTAAATAAAAAAGAAAAAGAAATAATTGAATTAAAATACGGGTGGAATGGTGATCCACTTAATTTTAGTCAAATAAGTAATAGATTTAATATTTCAGCTACTGCAGTTAGAGATTCACATAATAAGGCATTATGGAAGTTAAGACGAACTGAATTTATAAGGAATATGATTGCAGAAGAAGATAAAGAGAATAAATACAATAATTACAATTCAATTATAAAGTATATTGATAAAAAAGAACGGGAAGGAAAAACTAATACCTTTAATTTGAATGTTATAAAAGATAATCAGATTTTTAGTTTAATTTAG
PROTEIN sequence
Length: 247
MTNEELIKKYNDGDSSALDILIENNEKLVKYVVNKYSVDKYPSMDEDDLIQEGRIGLYIAATKFDIESDFKFSTYAFFWIKQRISRYVKQKSTYNEVSLNKKIGDDSNEMEQIIGIEDSEIDKVEDTLCNKNLRTSLQFLINHYLNKKEKEIIELKYGWNGDPLNFSQISNRFNISATAVRDSHNKALWKLRRTEFIRNMIAEEDKENKYNNYNSIIKYIDKKEREGKTNTFNLNVIKDNQIFSLI*