ggKbase home page
Advanced Search
Search Help

NECEvent2014_6_5_UNK

In projects: NECEvent2014_6_5

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 38.53 Longest contig: 9.29 Kbp Bin length: 990.99 Kbp GC content: 41.66 %
Contigs count: 462 Features count: 1330 rRNAs count: 0 tRNAs count: 19

Genome completeness

partial RP 1 / 55 BSCG 0 / 51 ASCG 0 / 38
Displaying items 251-300 of 462 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_6_5_scaffold_3060 176_005_scaffold_3060
Species: Desulfosporosinus orientis (50%)
2 1666 bp 28.87 5.76 98.14
NECEvent2014_6_5_scaffold_3573 176_005_scaffold_3573
Species: Ewingella americana (50%)
2 1390 bp 44.39 44.46 75.54
NECEvent2014_6_5_scaffold_4597 176_005_scaffold_4597
Species: Enterobacter cloacae (100%)
2 1070 bp 59.35 4.49 100.09
NECEvent2014_6_5_scaffold_4344 176_005_scaffold_4344 2 1129 bp 23.65 9.57 97.52
NECEvent2014_6_5_scaffold_3577 176_005_scaffold_3577
Species: Coprobacillus sp. 29_1 (50%)
2 1388 bp 33.14 9.29 99.86
NECEvent2014_6_5_scaffold_4345 176_005_scaffold_4345
Species: Clostridium sp. 7_2_43FAA (50%)
2 1129 bp 31.27 7.57 83.17
NECEvent2014_6_5_scaffold_4091 176_005_scaffold_4091
Species: Escherichia coli (100%)
2 1205 bp 50.71 73.44 18.92
NECEvent2014_6_5_scaffold_4605 176_005_scaffold_4605
Species: Enterobacter cloacae (100%)
2 1069 bp 55.10 2.81 96.82
NECEvent2014_6_5_scaffold_3329 176_005_scaffold_3329
Species: Enterobacter sp. MGH 24 (50%)
2 1495 bp 35.52 4.01 100.13
NECEvent2014_6_5_scaffold_2562 176_005_scaffold_2562
Species: Clostridium baratii (100%)
2 2067 bp 30.58 7.40 97.10
NECEvent2014_6_5_scaffold_4869 176_005_scaffold_4869
Species: Cellulosilyticum lentocellum (50%)
2 1016 bp 27.07 7.38 95.37
NECEvent2014_6_5_scaffold_2566 176_005_scaffold_2566
Species: Bacillus safensis (50%)
2 2060 bp 23.16 9.32 99.32
NECEvent2014_6_5_scaffold_3846 176_005_scaffold_3846
Species: Ruminococcus sp. CAG:17 (50%)
2 1282 bp 31.90 12.87 82.37
NECEvent2014_6_5_scaffold_4870 176_005_scaffold_4870
Species: Klebsiella pneumoniae (100%)
2 1016 bp 55.81 105.41 76.48
NECEvent2014_6_5_scaffold_4359 176_005_scaffold_4359
Species: Staphylococcus epidermidis (50%)
2 1124 bp 30.87 4.00 91.55
NECEvent2014_6_5_scaffold_4871 176_005_scaffold_4871
Species: Enterobacter cloacae (50%)
2 1016 bp 59.35 3.84 101.28
NECEvent2014_6_5_scaffold_4106 176_005_scaffold_4106
Species: Bacillus megaterium (50%)
2 1198 bp 25.13 6.01 101.42
NECEvent2014_6_5_scaffold_3083 176_005_scaffold_3083
Species: Enterobacter asburiae (50%)
2 1648 bp 53.09 3.28 93.75
NECEvent2014_6_5_scaffold_4366 176_005_scaffold_4366
Species: Enterobacter sp. BIDMC 29 (50%)
2 1123 bp 53.16 3.47 99.38
NECEvent2014_6_5_scaffold_3858 176_005_scaffold_3858
Species: Enterobacter cloacae (100%)
2 1276 bp 46.87 3.53 81.58
NECEvent2014_6_5_scaffold_4370 176_005_scaffold_4370
Species: [Ruminococcus] gnavus (50%)
2 1122 bp 29.23 9.09 89.30
NECEvent2014_6_5_scaffold_3348 176_005_scaffold_3348
Species: Clostridium pasteurianum (50%)
2 1484 bp 29.78 6.87 98.65
NECEvent2014_6_5_scaffold_4630 176_005_scaffold_4630
Species: Enterobacter cloacae (100%)
2 1064 bp 57.80 4.79 98.97
NECEvent2014_6_5_scaffold_2583 176_005_scaffold_2583
Species: Clostridium botulinum (50%)
2 2044 bp 26.76 6.16 91.59
NECEvent2014_6_5_scaffold_3864 176_005_scaffold_3864
Species: Enterobacter cloacae (100%)
2 1275 bp 53.33 4.71 84.24
NECEvent2014_6_5_scaffold_4384 176_005_scaffold_4384
Species: Enterobacter sp. 35027 (50%)
2 1119 bp 58.62 4.02 96.78
NECEvent2014_6_5_scaffold_3873 176_005_scaffold_3873
Species: Enterobacter cloacae (100%)
2 1271 bp 53.89 2.83 92.29
NECEvent2014_6_5_scaffold_3362 176_005_scaffold_3362
Species: Clostridium botulinum (50%)
2 1478 bp 25.17 7.31 86.06
NECEvent2014_6_5_scaffold_3621 176_005_scaffold_3621
Species: Enterobacter cloacae (100%)
2 1368 bp 44.81 5.26 101.54
NECEvent2014_6_5_scaffold_4389 176_005_scaffold_4389
Species: Enterobacter hormaechei (50%)
2 1118 bp 55.81 4.03 117.00
NECEvent2014_6_5_scaffold_3110 176_005_scaffold_3110
Species: Peptoclostridium difficile (50%)
2 1630 bp 25.89 6.26 75.09
NECEvent2014_6_5_scaffold_4904 176_005_scaffold_4904
Species: Enterobacter sp. 35683 (50%)
2 1009 bp 53.32 3.57 88.31
NECEvent2014_6_5_scaffold_3883 176_005_scaffold_3883
Species: Enterobacter cloacae (50%)
2 1265 bp 55.65 4.98 69.01
NECEvent2014_6_5_scaffold_3116 176_005_scaffold_3116
Species: Actinoplanes friuliensis (50%)
2 1623 bp 31.85 9.06 85.40
NECEvent2014_6_5_scaffold_4396 176_005_scaffold_4396
Species: Mesorhizobium plurifarium (50%)
2 1116 bp 26.34 141.67 66.67
NECEvent2014_6_5_scaffold_4142 176_005_scaffold_4142
Species: Escherichia coli (50%)
2 1188 bp 56.14 75.00 96.21
NECEvent2014_6_5_scaffold_2095 176_005_scaffold_2095
Species: Citrobacter freundii (100%)
2 2834 bp 39.41 27.10 88.29
NECEvent2014_6_5_scaffold_2097 176_005_scaffold_2097
Species: Yersinia pestis (50%)
2 2822 bp 54.89 5.32 100.04
NECEvent2014_6_5_scaffold_3634 176_005_scaffold_3634
Species: Enterobacter hormaechei (100%)
2 1366 bp 56.44 5.93 94.00
NECEvent2014_6_5_scaffold_4658 176_005_scaffold_4658
Species: Enterobacter cloacae (50%)
2 1059 bp 56.75 4.53 95.75
NECEvent2014_6_5_scaffold_2099 176_005_scaffold_2099
Species: Erysipelotrichaceae bacterium 3_1_53 (50%)
2 2818 bp 25.30 12.99 73.67
NECEvent2014_6_5_scaffold_4147 176_005_scaffold_4147
Species: Klebsiella pneumoniae (50%)
2 1186 bp 63.24 5.44 96.63
NECEvent2014_6_5_scaffold_2613 176_005_scaffold_2613
Species: Clostridium botulinum (50%)
2 2019 bp 27.93 5.79 98.51
NECEvent2014_6_5_scaffold_3381 176_005_scaffold_3381
Species: [Clostridium] saccharolyticum (50%)
2 1470 bp 54.63 5.31 98.16
NECEvent2014_6_5_scaffold_2614 176_005_scaffold_2614
Species: Enterobacter cloacae (100%)
2 2017 bp 54.49 6.54 100.10
NECEvent2014_6_5_scaffold_4152 176_005_scaffold_4152
Species: Escherichia coli (50%)
2 1184 bp 56.84 92.99 96.28
NECEvent2014_6_5_scaffold_3897 176_005_scaffold_3897
Species: Enterobacter hormaechei (100%)
2 1258 bp 48.33 5.48 76.31
NECEvent2014_6_5_scaffold_2618 176_005_scaffold_2618
Species: Paenisporosarcina sp. HGH0030 (50%)
2 2014 bp 28.55 10.13 83.71
NECEvent2014_6_5_scaffold_4412 176_005_scaffold_4412
Species: Enterobacter cloacae (50%)
2 1111 bp 58.87 6.89 99.37
NECEvent2014_6_5_scaffold_2879 176_005_scaffold_2879
Species: Clostridium baratii (100%)
2 1795 bp 32.98 8.36 93.59
Displaying items 251-300 of 462 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.