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NECEvent2014_6_5_scaffold_1030_2

Organism: NECEvent2014_6_5_Clostridium_paraputrificum_30_193

near complete RP 48 / 55 MC: 1 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: 980..1684

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335. similarity UNIPROT
DB: UniProtKB
  • Identity: 87.6
  • Coverage: 234.0
  • Bit_score: 402
  • Evalue 3.60e-109
sigE; RNA polymerase sigma-E factor similarity KEGG
DB: KEGG
  • Identity: 86.3
  • Coverage: 234.0
  • Bit_score: 401
  • Evalue 1.60e-109

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Taxonomy

Clostridium chauvoei → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 705
ATGAAGTTAGATGTATTGTTAAACAGAATTGTACAAAAGTTTAAATTTCTATCTAAAAAGTTACATTATGTAGGAGGAAATGATGCATTACCACCACCACTTACAAAGGAGGAAGAAGAAGAGTTAGTAGGTAAATTATTAAATGGGGAAGAAAGTATTAGAAGTACTTTAATTGAAAGAAACCTAAGGCTAGTAGTTTATATAGCAAGAAAGTTTGAAAATACTGGAGTTTATATAGAAGATTTAATATCAGTTGGAACAATAGGCTTAATAAAAGCTGTAAATACATTTAATCCAGAGAAAAAAATAAAGTTAGCAACTTATGCATCTAGATGTATTGAAAATGAAATCCTTATGTATTTAAGAAGAAACAGTAAGGTAAAGGCTGAAATATCCTTTTATGAACCATTAAATATAGACTGGGATGGAAATGAATTACTATTATCAGATATTTTAGGAACAGAAAATGATACTGTTTATAATTTAATTGAAGATGAAGTTGATAAGGAATTATTATTTATGGCTTTAAAGAATTTAAATGATAGAGAAAAAGAAATTGTTCAACTTAGGTTTGGGTTAAATGGAAAGAGAGAAAAGACTCAGAAGGAAGTGGCAGACTTACTTGGCATATCACAATCATATATATCAAGGCTTGAAAAGAAAATTATAAATAGATTAAAAAAAGAAATTAGTAGAATGATATAG
PROTEIN sequence
Length: 235
MKLDVLLNRIVQKFKFLSKKLHYVGGNDALPPPLTKEEEEELVGKLLNGEESIRSTLIERNLRLVVYIARKFENTGVYIEDLISVGTIGLIKAVNTFNPEKKIKLATYASRCIENEILMYLRRNSKVKAEISFYEPLNIDWDGNELLLSDILGTENDTVYNLIEDEVDKELLFMALKNLNDREKEIVQLRFGLNGKREKTQKEVADLLGISQSYISRLEKKIINRLKKEISRMI*