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NECEvent2014_6_5_scaffold_464_22

Organism: NECEvent2014_6_5_Citrobacter_freundii-rel_52_24_partial

partial RP 18 / 55 MC: 3 BSCG 19 / 51 ASCG 9 / 38 MC: 2
Location: comp(16845..19307)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1444046 species="Bacteria; Proteobacteria; Gam similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 820.0
  • Bit_score: 1631
  • Evalue 0.0
exoribonuclease R similarity KEGG
DB: KEGG
  • Identity: 98.9
  • Coverage: 820.0
  • Bit_score: 1616
  • Evalue 0.0

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2463
ATGTCACAAGATCCTTTCCAGGAACGCGAAGCTGAAAAATACGCGAATCCTATCCCAAGCCGGGAATTTATCCTCGAACATTTAACTAAACGTGAAAAACCGGCCAACCGCGATGAGCTGGCCGCTGAACTCAACATTGAAGGTGAAGAGCAGCAGGAAGCACTGCGCCGCCGTCTGCGCGCGATGGAGCGTGACGGACAACTGGTCTTCACTCGTCGTCAGTGCTATGCGCTGCCGGAGCGTCTCGACCTGCTGAAAGGTACCGTTATTGGCCACCGTGATGGCTACGGCTTTCTGCGCGTTGAAGGCCGCAAAGATGACCTGTACCTGTCCAGCGAGCAGATGAAAACCTGCATTCATGGCGATCAGGTGCTGGCGCAGCCGCTGGGCGCGGACCGTAAAGGTCGTCGCGAAGCGCGTATTGTGCGCGTACTGGTGCCAAAAACCAGCCAAATTGTCGGTCGCTACTTCACCGATGCTGGCGTTGGGTTTGTCGTCCCTGACGACAGCCGTCTGAGTTTCGATATCCTGATCCCGCCGGAAGAGGTGATGGGCGCTCGTATGGGCTTTGTGGTCGTCGTTGAACTGACCCAACGTCCGACTCGCCGCACCAAAGCGGTGGGTAAAATTGTAGAAGTGCTGGGTGACAACATGGGAACCAGCATGGCCGTTGATATGGCCCTGCGTACTCATGAAATCCCATATATCTGGCCGCAGGCTGTTGAGAAACAGGTCGCCGGGCTGAAAGAAGAAGTGCCGGAAGAGGCGAAAATAGGACGTGTCGATCTGCGCGACCTGCCGTTGGTGACTATCGATGGCGAAGATGCGCGTGACTTCGACGATGCGGTTTACTGCGAGAAGAAACGCGGCGGCGGCTGGCGTTTATGGGTGGCAATTGCCGACGTAAGCTATTACGTTCGCCCGCCGACTCCGCTGGACCAGGAAGCCCGCAGCCGTGGCACATCCGTTTACTTCCCGTCGCAGGTTGTTCCGATGCTGCCGGAAGTGCTGTCTAACGGATTGTGTTCGCTCAACCCGCAGGTGGACAGGTTGTGTATGGTCTGTGAAATGACCATTTCGTCGAAAGGCCGTTTAACCGGCTTTAAATTCTACGAAGCGGTCATGAGTTCCCATGCACGTCTGACCTACACCAAGGTCTGGCACATGCTGCAGGGCGACCAGGAGCTGCGTGAGCAGTACGCACCGCTGGTCAAACACATTGAAGAGCTGCATAACCTCTACAAAGTGCTGGATAAAGCCCGTGAAGAGCGCGGCGGTATCTCGTTTGAAAGTGAAGAGGCGAAGTTTATCTTCAATGCTGAACGCCGTATTGAGCGTATTGAGCAGACGCAGCGTAATGACGCGCACAAGCTGATTGAAGAGTGCATGATCATGGCGAACATCTCAGCGGCGCGATTCGTTGAGAAAGCCAAAGAGCCAGCGCTGTTCCGTATTCACGATAAGCCGACGACCGAAGCGATTAACTCGTTCCGTTCCGTCCTGGCAGAGCTGGGACTGGAGCTGCCAGGAGGCAACAAACCTGAGCCGCGCGATTACGCTGAACTGCTGGAGTCGATTGCTGACCGTCCTGACGCAGAAATGCTGCAAACCATGCTGCTGCGTTCGATGAAGCAGGCGATTTACGATCCGGAAAACCGTGGTCACTTCGGCCTGGCGCTGCAATCTTATGCACACTTTACTTCACCGATCCGTCGTTACCCGGATCTCTCCTTGCACCGGGCGATTAAGTATCTGCTGGCGCAGGAGCAGGGTCATAAAGGCAACACCACGGAAACGGGTGGCTACCATTATTCGATGGAAGAGATGCTGCAACTGGGTCAGCACTGTTCGATGGCCGAGCGCCGTGCTGACGAAGCCACACGCGATGTCTCTGACTGGCTGAAGTGCGACTTCATGCTGGATCAGGTGGGGAATGTCTTCAAAGGCGTGATTGCCAGCGTCACCGGATTTGGTTTCTTTGTCCGTCTTGATGAGCTGTTTATCGACGGTCTGGTGCATGTCTCCTCCCTGGATAACGACTACTATCGTTTCGACCAGGTTGGGCAGCGCCTGACGGGGGAATCCAGCGGTCAGATGTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTGGAAGCAGTCAACATGGACGAGCGTAAGATCGACTTTAGCTTGATCTCCAGCGAACGTGCGCCGCGTAATGAAGGTAAAACTGCGCGCGAAAAAGCCAAAAAAAGCGATGCGGGTAAAAATACCGGTAAACGTCGTCAGATGGGCAAAAAGGTGAATTTCGAGCCGGACAGCGCCTTCCGCGGCGAGAAAAAAGGCAGAGCCAAACCTCAGGCGGAAAAGAATGCGGCTGAGAAGAAAGGCGACAAAAAAGCGAAAAAGCCATCGGCAAAAACGCTTAAAATCGCTGCCGCCACCAAAGCTAAACGTGCGGCGAAAAAGAAAGTCGCACAATAA
PROTEIN sequence
Length: 821
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAAELNIEGEEQQEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPPEEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPQAVEKQVAGLKEEVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEPALFRIHDKPTTEAINSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFFVRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNEGKTAREKAKKSDAGKNTGKRRQMGKKVNFEPDSAFRGEKKGRAKPQAEKNAAEKKGDKKAKKPSAKTLKIAAATKAKRAAKKKVAQ*