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NECEvent2014_6_5_scaffold_482_16

Organism: NECEvent2014_6_5_Citrobacter_freundii-rel_52_24_partial

partial RP 18 / 55 MC: 3 BSCG 19 / 51 ASCG 9 / 38 MC: 2
Location: 11232..12665

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 98.7
  • Coverage: 477.0
  • Bit_score: 924
  • Evalue 1.10e-266
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freund similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 477.0
  • Bit_score: 931
  • Evalue 4.60e-268

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Taxonomy

Citrobacter freundii → Citrobacter → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1434
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCTCAGCTACAACAGGCTATCCGTCTGTTGCAGCTGTCCACGCTGGAACTTCAGCAAGAACTTCAGCAAGCGCTGGAAAGTAACCCACTGCTCGAGCAAACCGATCTTCACGACGAAATTGATACCCAGGAAAAACAGGACAGCGAAACCCTCGACACCGCTGATGCTCTCGAACAAAAAGAGATGCCTGAGGAGCTGCCACTCGATGCCAGTTGGGATGAAATTTATACCGCCGGGACCCCTTCGGGCACCAGCGGAGATTACATCGACGACGAGCTGCCTGTGTATCAAGGTGAGACCACGCAATCACTACAGGATTACCTGATGTGGCAAGTGGAACTGACCCCGTTCTCGGATACCGATCGCGCCATTGCGACATCCATTGTGGATGCGGTAGACGAAACCGGTTATCTCACCGTGACCCTGGACGATATTCTCGAAAGCATGGGCGATGACGACGTCGGTATGGACGAAATCGAAGCCGTGCTTAAACGCGTTCAGCGCTTTGATCCCGTCGGCGTGGCCGCTAAAGATCTCCGCGACTGCTTACTGATCCAACTTTCGCAGTTTGATAAAGCCACACCGTGGCTGGAAGAAGCGCGCCTGATCATCAGCGATCATCTCGATCTGTTAGCCAACCATGACTTCCGCACGCTGATGCGCGTGACCCGACTAAAAGAAGACGTGCTAAAAGAAGCCGTCAATCTTATTCAGTCACTGGATCCAAGGCCTGGGCAGTCGATCCAGACTGGCGACCCAGAATACGTTATTCCGGATGTGCTGGTGCGTAAGCATAACGATCGCTGGGTGGTCGAACTCAACAGCGACAGCATCCCACGACTGCAGATTAACCAGCACTACGCCGCTATGTGCAATAGCGCGCGCAACGATGCCGACAGTCAGTTTATCCGTAGCAATCTACAGGATGCGAAGTGGCTGATTAAAAGCCTGGAAAGCCGCAATGATACACTGCTGCGCGTAAGTCGTTGCATCGTTGAACAACAGCAAGCCTTCTTTGAGCAAGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGATATCGCCCAGGCCGTCGAGATGCACGAATCGACCATTTCCCGTGTGACCACGCAAAAGTATCTGCACAGTCCGCGCGGCATTTTTGAATTGAAGTATTTCTTTTCCAGTCACGTTAATACTGAAGGTGGAGGCGAAGCCTCATCCACGGCGATCCGTGCGCTGGTGAAGAAATTAATTGCTGCGGAAAACCCCGCGAAACCTCTGAGTGACAGCAAGTTAACCTCTATGCTGTCAGAACAGGGTATCATGGTGGCACGCCGCACCGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGCAAACAGCTGGTCTGA
PROTEIN sequence
Length: 478
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEIDTQEKQDSETLDTADALEQKEMPEELPLDASWDEIYTAGTPSGTSGDYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVTLDDILESMGDDDVGMDEIEAVLKRVQRFDPVGVAAKDLRDCLLIQLSQFDKATPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGDPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV*