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NECEvent2014_6_5_scaffold_923_6

Organism: NECEvent2014_6_5_Citrobacter_freundii-rel_52_24_partial

partial RP 18 / 55 MC: 3 BSCG 19 / 51 ASCG 9 / 38 MC: 2
Location: 4479..5198

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma similarity UNIPROT
DB: UniProtKB
  • Identity: 99.6
  • Coverage: 239.0
  • Bit_score: 465
  • Evalue 4.70e-128
fliA; flagellar biosynthesis sigma factor similarity KEGG
DB: KEGG
  • Identity: 98.7
  • Coverage: 239.0
  • Bit_score: 462
  • Evalue 1.00e-127

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Taxonomy

Citrobacter freundii → Citrobacter → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 720
GTGAATTCACTGTATACCGCTGAAGGTGTAATGGATAAACACTCGCTGTGGCAGCGTTATGTACCGTTGGTGCGTCACGAAGCATTGCGCCTTCAGGTGCGTTTGCCGGCGAGCGTAGAACTGGATGACCTGCTACAAGCGGGCGGCATCGGGTTATTGAATGCCGTTGACCGATATGACGCTTTGCAAGGAACGGCATTTACCACTTACGCAGTGCAGCGTATTCGTGGAGCAATGCTGGACGAACTACGTAGCCGGGATTGGGTGCCGCGTAGCGTTCGGCGCAATGCTCGCGAAGTGGCACAGGCGATGGGACAACTGGAGCAGGAATTAGGGCGCAACGCGACGGAAACCGAAGTGGCGGCGCGTCTGGCTATTCCTGTGCAAGAGTATCGTCAGATGTTGCTCGATACCAATAACAGCCAACTCTTCTCTTATGACGAGTGGCGGGAAGAGCATGGCGATAGTATTGAGCTGGTGACGGAAGAACATCAGCAGGAAAACCCGTTACAACAGCTTCTTGAGGGTAACCTCCGCCAGCGCGTGATGGACGCGATCGAGGCGTTGCCGGAGCGCGAAAAGCTGGTGTTAACGCTGTACTACCAGGAAGAGCTGAATCTGAAAGAGATTGGCGCGGTACTGGAAGTCGGGGAGTCACGGGTTAGCCAGTTGCACAGTCAGGCCATCAAACGTCTACGCACCAAGCTGGGTAAGCTATAG
PROTEIN sequence
Length: 240
VNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEVAARLAIPVQEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLQQLLEGNLRQRVMDAIEALPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL*