ggKbase home page

NECEvent2014_6_5_scaffold_2331_1

Organism: NECEvent2014_6_5_Clostridium_7_2_43FAA_28_9

near complete RP 48 / 55 MC: 5 BSCG 45 / 51 MC: 1 ASCG 15 / 38 MC: 2
Location: comp(3..2387)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su similarity UNIPROT
DB: UniProtKB
  • Identity: 99.6
  • Coverage: 795.0
  • Bit_score: 1567
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase, beta subunit (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 90.1
  • Coverage: 795.0
  • Bit_score: 1438
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium sp. 7_2_43FAA → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 2385
GCTATATCTCTTATAGATTCATTATTCTTTGATGCAAAGAGATACGATTTATCAAGAGTTGGTAGATATAAGTTTAATAAGAAGTTAGCTTTAAACTTAAGATTGGTTAACCAAGTTGCAGCTACAGACATAGTTAATCCTCAAACAGGAGAAATTATGGTTGAGCAAGGTAAGAAGATTAGTAGATCTCTTGCAGAAGAAATTCAAAACGTTGGTATAAACTCAGTTGATATATTAATTGAGGATAGAGTGGTTAGAGTAATTGGTAACCATTTTGTTGATATTAAGAATTTTGTATCATTTAATATAGAAGATTTAAATATCAGAGAACTTGTTCACTATCCAACATTAAAAGAGATATTAGACAACTATGATGATGAAGACACTATAAAAGAAGAAATAAAGAAAAACTTAAATAGACTTATTCCTAAACATATAATAAGAGATGATATATTTGCAACTATAAGTTACGAATTAGGATTACCTTATTCAGTAGGTTATGTTGATGATATAGATCACTTAGGAAATAGAAGATTAAGATCAGTAGGTGAATTACTACAAAATCAATTTAGAATTGGTTTATCAAGAATGGAAAGAGTAGTTAAGGAAAGAATGACTATTCAAGATCAAGAAGCTATAACACCTCAAATGTTAATTAACATAAGACCTGTTGCAGCTGCTATTAAAGAATTCTTTGGTAGTTCACAATTATCACAATTCATGGATCAAGTAAATCCATTATCAGAATTAACACATAAGAGAAGATTATCAGCTTTAGGACCAGGAGGTCTTTCAAGAGAAAGAGCTGGCTTTGAAGTTAGAGACGTTCACCATTCTCACTATGGTAGAATGTGTCCTATAGAAACTCCAGAAGGACCAAATATAGGGCTTATTAACTCATTAGCAACATATGCTAAAGTTAATGAATATGGATTTATAGAGACTCCTTATAGAGTTGTTGATAAAGAAAAAGGTATAATAACAGACGAAATAAGATACTTTACAGCAGATGAAGAAGATTTATACCTTGTAGCTCAAGCAAAAGAACCTATAGGAGAAGATAGAAAGTTTGTTGATAGCAGAGTTACTGTTAGAAGTAAACATGATATATTAGTAGTTAATGCTGATGAGGTTGATTTAATAGATGTATCACCAAGACAAATAGTATCAGTAGCTACAGCGATGATACCGTTCCTTGAAAATGACGATGCTTCAAGAGCTCTTATGGGATCAAACATGCAACGTCAAGCGGTTCCATTATTAAAACCTCAAGCACCAGTAGTTGGTACTGGAATAGAATTTAAAGCTGCAGTAGACTCTGGAGTTCTTCCAAAGGCTAAAAATGCGGGTAAGGTAGTTTACGTAAGTTCTAATGAAATTAGAATCAAGAGAGACGTAGACGGTGGAATGGATACTTATAATCTTCTTAAGTTCAAGAGAAGTAACCAAGGTACATGTATAAACCAAAGACCTTTAGTAGATAAAGGCGAAATAGTGTTTAAGAACCAAGTGTTAGCTGATGGTCCATCAACTGATTTAGGTGAAATAGCATTAGGTAAAAACATTAGAATGGGCTTCATAACTTGGGAAGGATATAACTACGAAGATGCTATGCTTATTTCTGAAGAACTAGTTAGAGAAGATGTATTTACTTCAATTCATATAGAAGAATATGAATGTGAAGCTAGAGATACAAAGCTAGGACCTGAAGAAATAACTAGAGATATTCCAAACGTAAGTGAAGATGCATTAAAGGATATAGATGACAGAGGAATAATAAGAATAGGTGCTGAGGTTAGATCAGGGGATATTCTTGTAGGTAAAGTTACACCTAAGGGAGAAACTGAATTAACAGCAGAAGAAAGATTATTAAGAGCTATATTTGGAGAGAAAGCTAGAGAAGTAAGAGATACTTCATTAAGAGTACCACATGGAGAAGCTGGAATAATAGTAGATGTTAAAGTGTTTACTAGAGAAAACGGTGATGAATTAAATCCAGGTGTAAATGAACTAGTTAGATGTTATATAGCTCAAAAGAGAAAAATCTCTGTTGGGGATAAAATGGCTGGACGTCATGGTAATAAAGGGGTTATCTCAAGAGTATTACCAGAAGAAGATATGCCATTCTTACCAGATGGTAGACCATTACAAATTTGCTTAAACCCATTGGGGGTTCCATCACGTATGAACATCGGTCAGGTACTAGAGGTTCACTTAGGATGGGCAGCAAGTCAATTAGGATGGCACATAGCTACTCCTGTATTTGATGGTGCTACTGAAAAAGACATTGAAGATTGCTTAGAAAAAGCAGGATACAATGCAAATGGAAAAACTGTTTTATATGATGGTAGAACAGGAGAAGCTTTTGATAATGAAGTAACTGTT
PROTEIN sequence
Length: 795
AISLIDSLFFDAKRYDLSRVGRYKFNKKLALNLRLVNQVAATDIVNPQTGEIMVEQGKKISRSLAEEIQNVGINSVDILIEDRVVRVIGNHFVDIKNFVSFNIEDLNIRELVHYPTLKEILDNYDDEDTIKEEIKKNLNRLIPKHIIRDDIFATISYELGLPYSVGYVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEAITPQMLINIRPVAAAIKEFFGSSQLSQFMDQVNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLATYAKVNEYGFIETPYRVVDKEKGIITDEIRYFTADEEDLYLVAQAKEPIGEDRKFVDSRVTVRSKHDILVVNADEVDLIDVSPRQIVSVATAMIPFLENDDASRALMGSNMQRQAVPLLKPQAPVVGTGIEFKAAVDSGVLPKAKNAGKVVYVSSNEIRIKRDVDGGMDTYNLLKFKRSNQGTCINQRPLVDKGEIVFKNQVLADGPSTDLGEIALGKNIRMGFITWEGYNYEDAMLISEELVREDVFTSIHIEEYECEARDTKLGPEEITRDIPNVSEDALKDIDDRGIIRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGIIVDVKVFTRENGDELNPGVNELVRCYIAQKRKISVGDKMAGRHGNKGVISRVLPEEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAASQLGWHIATPVFDGATEKDIEDCLEKAGYNANGKTVLYDGRTGEAFDNEVTV