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NECEvent2014_6_6_Clostridiales_50_23_scaffold_42_2

Organism: NECEvent2014_6_6_Clostridiales_50_23_plum

near complete RP 47 / 55 MC: 2 BSCG 46 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 963..1598

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma subunit ECF family n=1 Tax=Clostridium sp. CAG:81 RepID=R5GGY7_9CLOT similarity UNIREF
DB: UNIREF100
  • Identity: 41.5
  • Coverage: 164.0
  • Bit_score: 121
  • Evalue 8.00e-25
RNA polymerase sigma subunit ECF family {ECO:0000313|EMBL:CCY12107.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" sou similarity UNIPROT
DB: UniProtKB
  • Identity: 41.5
  • Coverage: 164.0
  • Bit_score: 121
  • Evalue 1.10e-24
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 44.6
  • Coverage: 166.0
  • Bit_score: 119
  • Evalue 8.60e-25

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Taxonomy

Clostridium sp. CAG:81 → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 636
ATGACATCTTCAAACCAATGGATCCAATGGGTCAAACCGGCACAGGCAGGTGACCAAGAGGCCTTTACCGACCTGGTGCGCTATTTCCAAACGGAAGGCTACCGGGCCGCCTGGCTATGGGCGGGCGATGGGGCGGAAGATATTTTGCAGGAGGCCTTTATTATCTGCTGGCAAAAATTGCCGCAACTGCGCAAGCCAGCCGCCTTTCGCAGCTGGTTTTACCGGATTTTACGGCGCACCGCCCTGGATTACGTCAACAAGCACCGGGCTGAACTTCCCCAGGACAACCTGGACCCCCTCATCAGCCCACCACCCGGCAGTCCCTCAGCGACCGATGCCGACCGCTTGCAGGCAGCCCTCCGAGAACTGCCCGACCTCCAGCGCGATGCCTGTACCCTCTATTACTACGCCGGCTTCAGCGTCAAAGAGATTGCCGGTATGACCGGGGCCCCGGAGGCCACCGTCAAGTCCCGGCTCTTTCACGCCCGGAAAAAATTGCGGGCCCTGCTCTTAACCGATGGCATGGCCAGCCATCCGCCGACAGCTCAAGCTCAAAAGGAGGACCATCATGAACACCTACAAAAACACCTACAAAGACCCGGACCTGTCCAACCTGTTTCAAATGACAGCTTCAAG
PROTEIN sequence
Length: 212
MTSSNQWIQWVKPAQAGDQEAFTDLVRYFQTEGYRAAWLWAGDGAEDILQEAFIICWQKLPQLRKPAAFRSWFYRILRRTALDYVNKHRAELPQDNLDPLISPPPGSPSATDADRLQAALRELPDLQRDACTLYYYAGFSVKEIAGMTGAPEATVKSRLFHARKKLRALLLTDGMASHPPTAQAQKEDHHEHLQKHLQRPGPVQPVSNDSFK