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NECEvent2014_6_6_Clostridiales_50_23_scaffold_108_1

Organism: NECEvent2014_6_6_Clostridiales_50_23_plum

near complete RP 47 / 55 MC: 2 BSCG 46 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 3..2618

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=55779 species="Bacteria; Fir similarity UNIPROT
DB: UniProtKB
  • Identity: 46.1
  • Coverage: 878.0
  • Bit_score: 788
  • Evalue 1.10e-224
  • rbh
Transcription-repair-coupling factor n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DIN2_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 47.5
  • Coverage: 848.0
  • Bit_score: 775
  • Evalue 4.20e-221
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 47.5
  • Coverage: 848.0
  • Bit_score: 775
  • Evalue 1.20e-221

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Taxonomy

Moorella glycerini → Moorella → Thermoanaerobacterales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 2616
TATTATCAGGAGCGGCCCTTCGTTATTTTTGATGAACTGAACCGGATTGAAGACGATATTTTGGCCTCGGATGAAGAACGTCATCTGCAATTTACCGACTTGCTCACCCAGGGCATCGTTTTGCCGGGTCAGTGGGACAGCTATCTTACGGCGGAGGATTTTAAACCCCTGTTTGCCAACCAGGCGGTTTTGGCCTTTCAGGTCTTAAAGAGAGTGCCTAAGATTTGGACAGACATTCATTACAGCCTCTACCGGACAGAATCCTTGCCCCACTACTTTAATCAACTGAACCTACTTGAAAGCGAATTATTGCGGTGGCGGGACCTGGGCATGCGGATTTTAGCGCTTTATGATGACCAAGCCATCAGAGAAAAATTTCGCATTTTCTTGCAAGACCATGACCTTCCTTTTGTGGATACGCTGGACCTGGCTGAGCGGCCAGGACTTTACTTGCAGCCGAGTCCCTTGGCTGTGGGCGGTATCTTTTGGGAAGAGCGGTTGGTTGTCTTGCCGCTTCGACAAGCGCTCACCGGTAGTAAAAAACAGCGCCGCCGGCGGCGGAGCCAAGATGAAGCAGACCGTTACGATAGCGCGGAAGAGTTGAGCGTTGGCGATTATGTGGTGCATGACCAACACGGAATTGGTCAATTTTTAGGCATGAAGCACCAAAAAATCGGTGACGTGGAAAAAGACTACCTCATCGTTAAATACGCCGGCACGGATAAGTTGTATATTCCAGTGTCCCAGTTTGACCTCTTGCAGCGGTACATCGGCCATGAAGGGCAGAAGCCCAAGCTTAACCGCTTGAGTACCGGTGACTGGCAGCGTACGAAAAAACGAGTGACCCAGTCTGTGCAAGATATGGCGGACCGATTGATTCGTCTTTATGCCAAGCGCGAGCAGGAGCCGGGGCATGCCTTTCCGCCGGATAGTGATTTGCAGCGTGATTTTGAAGCGGACTTTCCCTATGTGGAAACGGATGATCAGCTTAAAGCCATTGCAGACGTCAAAGCAGATATGATGCGGACCAGACCCATGGATCGCCTGATATGCGGAGACGTCGGCTACGGTAAAACGGAAGTGGCGGTACGTGCAGCCTTTAAAGCCTTTTGCGATGCCAAGCAAGTGGCGGTACTGGTGCCGACCACGGTATTGGCGCAGCAGCATTACCAAACCTTTTCCGAACGCTTTATCCCCTATGGGGCAAAAGTGGCCGTACTTAGCCGGTTCAATACCGCTAAAGAAACGGCTGGAATTTTGGCCGACCTTCGCGATCACAAAATCGATGTGGTTATTGGCACCCATAAATTACTGGGTAAATCGGTTAAGTTTAACGATTTAGGCCTTCTGGTGGTTGATGAGGAGCAGCGTTTTGGCGTTACCCATAAAGAGCGCATCAAGGCCCTGAAGACGGATGTGGATGTGTTGACCTTATCTGCCACACCGATTCCGCGGACCCTGCAATTGTCACTGGTCGGCCTGCGTGATATGAGCGTTATTGAAACGCCGCCGGCAGACCGGTACCCCATACAGACCTATATTGTTGAATTTAACGATGCCATTTTGACCCAGGCCATCCGCCGGGAATTGGATCGAGGCGGACAAATTTACATCATTCATAACCGCGTCAGCGAACTGAATGAATTGGCCGCGCATATTCAGACCTTGGTACCTGAAGCCAGGTTAGCCATTGCCCATGGACGATCAACAGATCGACGGCTTGAAGAAACGATGATGGCCTTTGTCAATCAGGAATACGACATTTTAATTTGCACCACCATTGTAGAAACAGGCTTGGACATCCCTAATGTAAACACCTTAATTGTCCACCATGCAGACCGCTTCGGCCTCAGCCAACTTTATCAATTGCGTGGCCGGGTGGGCCGCTCCAAGCGCATCGCTTACGCCTATCTGACCTACGAACGGAATAAAATGCTGACCGATATCGCTGAAAAGAGGCTTAACACCTTAAAAGAGTACACCGCTTTAGGCTCCGGCTACCGCATTGCCATGAAAGATTTAGAACTGCGTGGCGCCGGAAATATCCTGGGCGCTGAGCAGCATGGTCATGTGGCCGATGTTGGATTTGCCCTCTATATGCAGCTTTTGGATGAAGCCATTCGCAAGCAGAGCGGCCAGGCCGTTAAAGAAAAACATACTGTCGAACTGGACGTGCACATGAATGCCTTTTTATCAAAAACCTATATTCCTGACGATGGGATGCGGTTGGGTATGTATAAGCGACTGGAGCAAGCTGAAAGTGCAGAAGAACTGGCGGCCTTGTCCGATGAATTACAAGACCGGTTCGGTTTATTTGATGAGCCACTGGTGAACTTATTGGCTTTGGTTTCCCTGAAACTGTTGGCCATGGAACTGGGCATTCGCTCAATCAAGCAACGTCATAATCAGCTGGAGTTGATGTTTTATCCGGATACACCGATTTCCATGCCTGTGCTGATGGCCTATGTTCAATCTTATAAGAATATTACCATTGGCAACCAAAGCGGTGAGCTGATAGTGAAATTGACGCTTTTAAAAGAACGTTTAACGGCAACTTATGTAGATTCAATTAAAGAACGCTTAAAAGGCATGCAAAAGATTGCGGTAGTCGATTAA
PROTEIN sequence
Length: 872
YYQERPFVIFDELNRIEDDILASDEERHLQFTDLLTQGIVLPGQWDSYLTAEDFKPLFANQAVLAFQVLKRVPKIWTDIHYSLYRTESLPHYFNQLNLLESELLRWRDLGMRILALYDDQAIREKFRIFLQDHDLPFVDTLDLAERPGLYLQPSPLAVGGIFWEERLVVLPLRQALTGSKKQRRRRRSQDEADRYDSAEELSVGDYVVHDQHGIGQFLGMKHQKIGDVEKDYLIVKYAGTDKLYIPVSQFDLLQRYIGHEGQKPKLNRLSTGDWQRTKKRVTQSVQDMADRLIRLYAKREQEPGHAFPPDSDLQRDFEADFPYVETDDQLKAIADVKADMMRTRPMDRLICGDVGYGKTEVAVRAAFKAFCDAKQVAVLVPTTVLAQQHYQTFSERFIPYGAKVAVLSRFNTAKETAGILADLRDHKIDVVIGTHKLLGKSVKFNDLGLLVVDEEQRFGVTHKERIKALKTDVDVLTLSATPIPRTLQLSLVGLRDMSVIETPPADRYPIQTYIVEFNDAILTQAIRRELDRGGQIYIIHNRVSELNELAAHIQTLVPEARLAIAHGRSTDRRLEETMMAFVNQEYDILICTTIVETGLDIPNVNTLIVHHADRFGLSQLYQLRGRVGRSKRIAYAYLTYERNKMLTDIAEKRLNTLKEYTALGSGYRIAMKDLELRGAGNILGAEQHGHVADVGFALYMQLLDEAIRKQSGQAVKEKHTVELDVHMNAFLSKTYIPDDGMRLGMYKRLEQAESAEELAALSDELQDRFGLFDEPLVNLLALVSLKLLAMELGIRSIKQRHNQLELMFYPDTPISMPVLMAYVQSYKNITIGNQSGELIVKLTLLKERLTATYVDSIKERLKGMQKIAVVD*