ggKbase home page

NECEvent2014_6_6_Clostridiales_50_23_scaffold_412_2

Organism: NECEvent2014_6_6_Clostridiales_50_23_plum

near complete RP 47 / 55 MC: 2 BSCG 46 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(1186..1599)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70, region 4 n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CHD2_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 35.4
  • Coverage: 130.0
  • Bit_score: 76
  • Evalue 2.50e-11
Sigma-70, region 4 {ECO:0000313|EMBL:ERI89924.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 35.4
  • Coverage: 130.0
  • Bit_score: 76
  • Evalue 3.50e-11
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 31.8
  • Coverage: 129.0
  • Bit_score: 72
  • Evalue 7.80e-11

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridiales bacterium oral taxon 876 → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 414
ATGAAAACCATCTATGTTCAAAAGCAAGCGGTTGAGGTCAGCGAGGCCGTTTACAAGGCCTATTGGCAGGCCAGCGAACAGGAACGCTACCAGAACCGGCTGGCGGCGGACCGCACTTGGACCATGAGCGATTTACAAGCCGCCGGCGTCCCCCTGGACGCCCTGGATGCCTTTGCGGTGACCAGCAGTGAAAGGGCTTTCTTCGCCGATCAAAGCCGGTCCCGGCTGATGACCGCCTTAGCTACCCTGCCGCCGGACCAGGAAGAGCACTTGTGGCGGCTGGTCCTGGGCGAAACGACAGAACGCGGTCTGGCGGCCGAACTGAGCCTTTCACCGGCCACCGTTCACAAGCGAAAAAAGCGGGCCCTGGCCACCCTCCGCAGCCTTTTGGAAGGAGAGGAAGAGGACCTTTAA
PROTEIN sequence
Length: 138
MKTIYVQKQAVEVSEAVYKAYWQASEQERYQNRLAADRTWTMSDLQAAGVPLDALDAFAVTSSERAFFADQSRSRLMTALATLPPDQEEHLWRLVLGETTERGLAAELSLSPATVHKRKKRALATLRSLLEGEEEDL*