ggKbase home page

NECEvent2014_6_7_scaffold_3870_1

Organism: NECEvent2014_6_7_Peptoclostridium_difficile_29_7_partial

partial RP 33 / 55 BSCG 30 / 51 ASCG 7 / 38 MC: 3
Location: 20..1780

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54-dependent transcriptional activator n=193 Tax=Clostridium difficile RepID=C9XRJ3_CLODC similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 586.0
  • Bit_score: 1151
  • Evalue 0.0
  • rbh
Sigma-54-dependent transcriptional activator {ECO:0000313|EMBL:CBE06926.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Pe similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 586.0
  • Bit_score: 1151
  • Evalue 0.0
prdR; sigma-54-dependent transcriptional activator similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 586.0
  • Bit_score: 1151
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Peptoclostridium difficile → Peptoclostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 1761
ATGTTTTCGATACCAGAAGTAAAAAAAGTAGAAGAGGTAATGGATACAAAATTTACAACTATAGACGAAGACACAAGAATTGAAGATGCAATAAAAGAAATGATAAAAAGCAACACAAAAACTCTAATGGTAATAGATTCATCTGACCAATTAAAAGGCATTATATCCATGACGGATATACATAATCTTTATGAGATGCATAAAAAGTATGAAGGTCAACCAGTAAAACTTATAATGAAGAAGGATGTAATATATGTCAACGAAGGTTTAACCTTAGATGAATGTAGAGATATAATGATATTAAAAAATATAGGGATTCTTCCTGTTCTTAGAGATAATAAAATTATTGGAGTTCTAAAACAAGAGCACATTAGGGACTATCTATATATGCATTTAGAAGATTATGGATTAACTTTGAAGTATATTATAGGTCAAATTAAAGAAGGAATTTGTGCTATAAATAACGAAGGTGTTGTTATCTTGTGGAATAAGTTTATGGAGGAAAGGTATGATATAAAGTCTGAAGATATAGTTGGTCGACCGATGAATGAATTTTTGGAAAATACTATTTCAGAAAAAGTACTAAATAGTAAAGTTGGAATGAGTGACTTGTATTTTACAGATAAAAAAGAAAATATGTATGCATTAGTTCATGCAAATCCTATATTTTATAAAGAAGAATTTATCGGTGTTGTATGTACAGAAGTTGATGTTACAGAAGCTAAGATATTAGCTCTTGAACTTGAAAAAGTAAATGATACATTAAAATATCTAAAGAACGAAGTCAAAAATTTATCTAAAGGTAGTTTTGATAAGATTTTAGGTAAAAGTTATAAATTGGAAAAATCGAAAGCGATTGCAAAACAAGTGGCTAGAACAAATAGTAGCATATTTATTTGGGGCGAAAGTGGTACAGGTAAAGAAGTATTTGCAAGAGCTATTCATGATTATAGTGAGAGAAAAGGTCAATTTATACCTGTTAACTGTAGTGCCATACCAAATGAGTTATTTGAAAGTGAGTTTTTTGGGTATGAATCAGGTGCGTTTACAGGAGCAAGTAAAAAGGGTCGAATAGGTATATTTGAACTTGCAAAAGATGGAACTGTATTTTTAGATGAAATTGCCGATTTACCTCTTAGTATGCAAGCAAAGTTGCTTAGAGTATTACAGGAAAAAGAAATAAGAAGAGTTGGTGGAGATACCACAATAAAAATAAATCCTAGAATAATATCAGCTACCAATAAAGATTTGAGTAAAATGGTAAAGGCAGAAAAATTTAGAGAAGATTTATACTATAGATTAAATGTTGTTGAAATAAAGATTCCTCCACTTAGAGAGAGAAAAGAAGACATAGGATTATTGGTTCATAGCTTTTTAGAGGAGATATGTAAACAAAATAATAAGCCTGTTCTTACAATTAGCAAAGATGTAATAGATATATTTCAGAATTATAGATGGAAAGGTAATATTAGAGAATTAAAAAATACGATTGAAAATATTGTTGTATTGTCACAAAATTCTAAAATAGATGTGGATGATGTACCAAGTTATATGATGGATTCTACAAATAATAGTACTGAAGAAGAAGAGTATCCTTTAGATTTAACGAAGGCAACTCAAAAAATTGAAATAAAGAATATAACCAAGGCACTTAAAATGTCTAATGGAAATAAAGCTAAAGCAGCTAAGATATTAAATATACCCAGAACAACTTTGTATTATAAGATAGACCAATACAAAATAGATGTGTCTAAAATATGA
PROTEIN sequence
Length: 587
MFSIPEVKKVEEVMDTKFTTIDEDTRIEDAIKEMIKSNTKTLMVIDSSDQLKGIISMTDIHNLYEMHKKYEGQPVKLIMKKDVIYVNEGLTLDECRDIMILKNIGILPVLRDNKIIGVLKQEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKSEDIVGRPMNEFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVVCTEVDVTEAKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVARTNSSIFIWGESGTGKEVFARAIHDYSERKGQFIPVNCSAIPNELFESEFFGYESGAFTGASKKGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATNKDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTISKDVIDIFQNYRWKGNIRELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEEYPLDLTKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKIDVSKI*