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NECEvent2014_6_7_scaffold_1499_1

Organism: NECEvent2014_6_7_Citrobacter_freundii-rel_52_48_partial

partial RP 20 / 55 MC: 2 BSCG 19 / 51 ASCG 9 / 38 MC: 2
Location: comp(313..2253)

Top 3 Functional Annotations

Value Algorithm Source
RNase E specificity factor CsrD n=1 Tax=Citrobacter sp. KTE30 RepID=R8UN81_9ENTR similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 646.0
  • Bit_score: 1269
  • Evalue 0.0
  • rbh
Regulatory protein CsrD {ECO:0000313|EMBL:KJC04413.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii comple similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 646.0
  • Bit_score: 1269
  • Evalue 0.0
regulatory protein CsrD similarity KEGG
DB: KEGG
  • Identity: 97.2
  • Coverage: 646.0
  • Bit_score: 1241
  • Evalue 0.0

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Taxonomy

Citrobacter freundii → Citrobacter → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1941
ATGCGATTAACGACGAAATTTTCAGCTTTTGTCACGCTGCTTACTGGGTTAACGATCTTCGTGACTCTGATCGGCTGTTCGCTGAGTTTCTATAACGCTATTCAATATAAGTTCACCACGCGCGTGCAGGCGGTCGCGACGGCGATTGATACGCATCTGGTCTCCAGAGATGTCGTTGCGTTAACCCCGCAAATCGATGAGCTGATGGTTTCTGTTGATATCGTGCGCATCGAACTGTTGCAGGGCGAACACGTGGTGTATGACCACTCGCGCACCAGTAGCTACCGACCGGCAGGGACGAACAATCTCTACCGCGAGATCACCGTACCGTTGGTCAAGCATCCGGGCATGTCATTGCGTCTGGTTTATCAGGATCCGATGGGTAACTATTTCCATTCGCTACTGACCACCGCACCGCTCACGATAGCCATTGCTTTCATTATTCTGATGCTCTTTTTGTCTGTGCGCTGGCTTCAGCGCCAGCTTTCGGGTCAGGAGCTGCTGGAGATTCGTTCCACACGTATTCTGAACGGCGAACGTGGGCCGAACGTGCGGGGAACGGTCTATGAATGGCCTGCGCGCACCAGCAGTGCGCTCGATATGCTGCTGACTGAAATTCAAAATGCTCGCGAGCAACGCAGCCGCCTGGATACGCTGATTCGTTCCTATGTCGCGCAGGATACAAAAACTGGGCTAAGCAACCGCCTGTTCTTTGATAACCAACTGGCCACGCTGCTGGAAGATCAGGAAAAAGTAGGCTCGCATGGCGTCGTGATGATGGTGCGCCTGCCGGACTTTACGCTGCTGCGCGATAGCTGGGGAATCACCCTCGCGGAAGAACAAATCTCGACGCTGATCAATTTGTTGTCGACTTTTATGACGCGCTATCCGGGCGCGTTGCTGGCGCGTTACCACCGTAGCGATTTTGCCATCCTGCTGCCACACCGCACGTTGAAAGAGGCGGAAAGCATTGCCGGGCAGTTATTAAAAGCGGTAGATGCACTTCCGGCTAATAAAATGATCGATCGTGCCGATATGGTTCATATTGGTATTTGCGTTTGCCGCAGCGGTCAGTCGCCGGAGCAAGTGATGGATCATGCTGAAGCAGCCACGCGGAATTCGGTATTGCAGGGTGGAAATAGCTGGTCGGTCTATGATGACTCGCTGCCGGAAAAAGGTCGGGGCAACGTACGCTGGCGAACGCTGATCGAACAGATGCTCAGCCGGGGCGGGCCGAGAATTTATCAAAAGCCTGCAGTAACCCGTGAAGGGCGGGTGCACCATCGGGAGCTGATGTGCCGTATTTTTGATGGCAACGAAGAGGTCATTTCGGCGGAATATATGCCGATGGTCCTTCAATTTGGCCTGGCTGAAGAGTATGACCGTTTGCAGATAAGCCGTCTGACCCTGCTTTTGGGTTACTGGCCGCAGGAAAATCTGGCGATGCAGATAACGGTTGAATCGCTTATTCGCCCACGTTTTCAGCGCTGGCTGCGTGATACGCTGATGCAGTGCGAAAAATCATTACGCAAACGCATAATTATTGAACTTGCTGAGGCAGATGTCTGTCAACATATCAGCCGGTTACAGCCCGTCATCAGATTGATGAATGCGCTGGGCGTGCGTATTGCCGTTACGCAGGCGGGGTTAACGCTGGTGAGCACCAGTTGGATTAAAGAGCTTAACGTTGAGTTATTGAAGCTGCATCCAAGTCTGGTGAGAAACATTGATAAGCGAACGGAAAATCAGCTTCTGGTTCAAAGCCTGGTGGAGGCCTGTTCGGGAACACCCACGCAGGTTTACGCTACGGGCGTACGTTCGCGTAGTGAGTGGCATACGCTGACAGAACGCGGAGTTGCGGGTGGGCAAGGGGATTTTTTTGCTGCATCACAACCACTTGACACTAACGTGAAAAAATATTCGCAAAGATACTCGGTTTAA
PROTEIN sequence
Length: 647
MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKFTTRVQAVATAIDTHLVSRDVVALTPQIDELMVSVDIVRIELLQGEHVVYDHSRTSSYRPAGTNNLYREITVPLVKHPGMSLRLVYQDPMGNYFHSLLTTAPLTIAIAFIILMLFLSVRWLQRQLSGQELLEIRSTRILNGERGPNVRGTVYEWPARTSSALDMLLTEIQNAREQRSRLDTLIRSYVAQDTKTGLSNRLFFDNQLATLLEDQEKVGSHGVVMMVRLPDFTLLRDSWGITLAEEQISTLINLLSTFMTRYPGALLARYHRSDFAILLPHRTLKEAESIAGQLLKAVDALPANKMIDRADMVHIGICVCRSGQSPEQVMDHAEAATRNSVLQGGNSWSVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAVTREGRVHHRELMCRIFDGNEEVISAEYMPMVLQFGLAEEYDRLQISRLTLLLGYWPQENLAMQITVESLIRPRFQRWLRDTLMQCEKSLRKRIIIELAEADVCQHISRLQPVIRLMNALGVRIAVTQAGLTLVSTSWIKELNVELLKLHPSLVRNIDKRTENQLLVQSLVEACSGTPTQVYATGVRSRSEWHTLTERGVAGGQGDFFAASQPLDTNVKKYSQRYSV*