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NECEvent2014_7_1_scaffold_1278_5

Organism: NECEvent2014_7_1_Escherichia_coli_51_198_partial

partial RP 25 / 55 MC: 2 BSCG 21 / 51 MC: 1 ASCG 9 / 38 MC: 1
Location: comp(4120..4425)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1365 Tax=Enterobacteriaceae RepID=HFQ_ECO24 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 101.0
  • Bit_score: 202
  • Evalue 1.70e-49
hfq; RNA chaperone protein similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 101.0
  • Bit_score: 202
  • Evalue 4.80e-50
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; E similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 101.0
  • Bit_score: 202
  • Evalue 2.40e-49

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 306
GCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTGTTCCAGTTTCTATTTATTTGGTGAATGGTATTAAGCTGCAAGGGCAAATCGAGTCTTTTGATCAGTTCGTGATCCTGTTGAAAAACACGGTCAGCCAGATGGTTTACAAGCACGCGATTTCTACTGTTGTCCCGTCTCGCCCGGTTTCTCATCACAGTAACAACGCCGGTGGCGGTACCAGCAGTAACTACCATCATGGTAGCAGCGCGCAGAATACTTCCGCGCAACAGGACAGCGAAGAAACCGAATAA
PROTEIN sequence
Length: 102
AKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE*