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NECEvent2014_7_1_Escherichia_coli_51_198_partial

NECEvent2014_7_1_Escherichia_coli_51_171
In projects: NECEvent2014_7_1

Consensus taxonomy: Escherichia coli  →  Escherichia  →  Enterobacteriales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 1-50 of 374 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_7_1_scaffold_3613 177_001_scaffold_3613
Species: Escherichia coli (100%)
1 1071 bp 57.42 7.56 88.80
NECEvent2014_7_1_scaffold_3193 177_001_scaffold_3193
Species: Escherichia coli (100%)
3 1208 bp 50.17 11.67 95.61
NECEvent2014_7_1_scaffold_2036 177_001_scaffold_2036
Species: Salmonella enterica (50%)
2 2074 bp 53.13 26.69 84.52
NECEvent2014_7_1_scaffold_2753 177_001_scaffold_2753
Genus: Klebsiella (50%)
4 1396 bp 52.65 67.80 90.90
NECEvent2014_7_1_scaffold_3689 177_001_scaffold_3689
Species: Escherichia coli (100%)
3 1056 bp 53.22 74.15 92.33
NECEvent2014_7_1_scaffold_1869 177_001_scaffold_1869
Order: Enterobacteriales (50%)
4 2378 bp 46.13 76.89 47.81
NECEvent2014_7_1_scaffold_2689 177_001_scaffold_2689
Species: Escherichia coli (60%)
5 1433 bp 47.31 80.91 94.00
NECEvent2014_7_1_scaffold_1250 177_001_scaffold_1250
Order: Enterobacteriales (100%)
3 4549 bp 40.23 80.92 68.92
NECEvent2014_7_1_scaffold_1541 177_001_scaffold_1541
Species: Escherichia coli (66.67%)
6 3347 bp 49.75 85.87 79.24
NECEvent2014_7_1_scaffold_2867 177_001_scaffold_2867
Species: Klebsiella pneumoniae (100%)
2 1326 bp 59.65 95.59 75.57
NECEvent2014_7_1_scaffold_2524 177_001_scaffold_2524
Species: Enterobacter cloacae (100%)
1 1538 bp 48.76 100.75 87.19
NECEvent2014_7_1_scaffold_2698 177_001_scaffold_2698
Species: Escherichia coli (100%)
1 1427 bp 55.22 101.02 93.76
NECEvent2014_7_1_scaffold_2424 177_001_scaffold_2424
Species: Escherichia coli (50%)
2 1616 bp 54.33 101.08 96.72
NECEvent2014_7_1_scaffold_1599 177_001_scaffold_1599
Order: Enterobacteriales (100%)
3 3172 bp 33.29 104.56 78.97
NECEvent2014_7_1_scaffold_1897 177_001_scaffold_1897
Species: Enterobacter cloacae (50%)
2 2323 bp 52.30 124.69 60.70
NECEvent2014_7_1_scaffold_1820 177_001_scaffold_1820
Species: Escherichia coli (100%)
3 2494 bp 56.34 128.05 94.31
NECEvent2014_7_1_scaffold_1018 177_001_scaffold_1018
Species: Raoultella ornithinolytica (66.67%)
6 5952 bp 58.90 130.42 94.76
NECEvent2014_7_1_scaffold_1424 177_001_scaffold_1424
Species: Escherichia coli (100%)
4 3840 bp 53.65 132.85 87.97
NECEvent2014_7_1_scaffold_1766 177_001_scaffold_1766
Species: Salmonella enterica (66.67%)
3 2625 bp 47.05 133.03 98.63
NECEvent2014_7_1_scaffold_1877 177_001_scaffold_1877
Species: Escherichia coli (100%)
3 2361 bp 44.13 133.67 96.57
NECEvent2014_7_1_scaffold_2182 177_001_scaffold_2182
Species: Escherichia coli (100%)
1 1877 bp 47.26 134.02 52.10
NECEvent2014_7_1_scaffold_1537 177_001_scaffold_1537
Species: Escherichia coli (100%)
5 3363 bp 50.46 134.83 82.60
NECEvent2014_7_1_scaffold_518 177_001_scaffold_518
Species: Escherichia coli (94.74%)
19 14483 bp 46.16 135.05 70.10
NECEvent2014_7_1_scaffold_1374 177_001_scaffold_1374
Species: Escherichia coli (100%)
3 4002 bp 52.95 135.79 88.38
NECEvent2014_7_1_scaffold_972 177_001_scaffold_972
Species: Escherichia coli (100%)
8 6320 bp 45.13 136.31 69.73
NECEvent2014_7_1_scaffold_370 177_001_scaffold_370
Species: Escherichia coli (80%)
15 15305 bp 37.03 138.85 95.48
NECEvent2014_7_1_scaffold_499 177_001_scaffold_499
Species: Escherichia coli (88.89%)
9 11984 bp 49.52 139.11 89.54
NECEvent2014_7_1_scaffold_648 177_001_scaffold_648
Species: Escherichia coli (100%)
12 9726 bp 46.87 139.34 91.24
NECEvent2014_7_1_scaffold_3050 177_001_scaffold_3050
Species: Salmonella enterica (100%)
1 1257 bp 49.48 140.21 94.27
NECEvent2014_7_1_scaffold_2285 177_001_scaffold_2285
Genus: Enterobacter (100%)
3 1759 bp 49.80 140.45 69.41
NECEvent2014_7_1_scaffold_1676 177_001_scaffold_1676
Species: Escherichia coli (100%)
2 2944 bp 54.18 140.93 97.62
NECEvent2014_7_1_scaffold_710 177_001_scaffold_710
Species: Escherichia coli (100%)
10 8981 bp 50.34 141.08 80.50
NECEvent2014_7_1_scaffold_3164 177_001_scaffold_3164 7 1219 bp 53.32 141.26 72.60
NECEvent2014_7_1_scaffold_946 177_001_scaffold_946
Species: Escherichia coli (90%)
10 6508 bp 55.02 141.26 98.00
NECEvent2014_7_1_scaffold_391 177_001_scaffold_391
Species: Salmonella enterica (66.67%)
9 14758 bp 47.22 141.65 86.60
NECEvent2014_7_1_scaffold_416 177_001_scaffold_416
Species: Escherichia coli (100%)
8 14115 bp 44.36 141.74 90.97
NECEvent2014_7_1_scaffold_255 177_001_scaffold_255
Species: Escherichia coli (89.47%)
19 20287 bp 51.08 141.90 89.47
NECEvent2014_7_1_scaffold_1195 177_001_scaffold_1195
Species: Escherichia coli (80%)
5 4796 bp 52.11 142.34 95.39
NECEvent2014_7_1_scaffold_722 177_001_scaffold_722
Species: Escherichia coli (62.5%)
8 8773 bp 63.41 142.37 91.10
NECEvent2014_7_1_scaffold_1438 177_001_scaffold_1438
Species: Escherichia coli (100%)
5 3784 bp 43.66 142.75 86.50
NECEvent2014_7_1_scaffold_64 177_001_scaffold_64
Species: Escherichia coli (95.74%)
47 50440 bp 47.87 142.75 88.41
NECEvent2014_7_1_scaffold_653 177_001_scaffold_653
Species: Escherichia coli (70%)
10 9703 bp 45.95 143.29 78.90
NECEvent2014_7_1_scaffold_213 177_001_scaffold_213
Species: Escherichia coli (100%)
18 22688 bp 50.15 143.42 90.71
NECEvent2014_7_1_scaffold_137 177_001_scaffold_137
Species: Escherichia coli (96.55%)
29 29441 bp 51.52 143.66 87.71
NECEvent2014_7_1_scaffold_363 177_001_scaffold_363
Species: Escherichia coli (95.83%)
24 25131 bp 49.56 144.31 89.22
NECEvent2014_7_1_scaffold_300 177_001_scaffold_300
Species: Escherichia coli (94.44%)
18 17513 bp 50.61 144.48 88.10
NECEvent2014_7_1_scaffold_1451 177_001_scaffold_1451
Species: Escherichia coli (100%)
3 3715 bp 54.10 144.95 89.64
NECEvent2014_7_1_scaffold_31 177_001_scaffold_31
Species: Escherichia coli (96%)
50 57859 bp 49.33 145.43 89.28
NECEvent2014_7_1_scaffold_37 177_001_scaffold_37
Species: Escherichia coli (96.43%)
84 85110 bp 50.44 145.56 88.70
NECEvent2014_7_1_scaffold_548 177_001_scaffold_548
Species: Escherichia coli (64.29%)
14 11113 bp 47.41 145.59 85.23
Displaying items 1-50 of 374 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.