ggKbase home page
Advanced Search
Search Help

NECEvent2014_7_2_UNK

In projects: NECEvent2014_7_2

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 81.44 Longest contig: 10.51 Kbp Bin length: 323.33 Kbp GC content: 52.11 %
Contigs count: 136 Features count: 422 rRNAs count: 1 tRNAs count: 17

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 1 / 38
Displaying items 51-100 of 136 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_7_2_scaffold_2316 177_002_scaffold_2316
Phylum: Proteobacteria (66.67%)
3 1319 bp 59.74 4.78 74.37
NECEvent2014_7_2_scaffold_1150 177_002_scaffold_1150 3 2518 bp 40.47 15.49 93.41
NECEvent2014_7_2_scaffold_1428 177_002_scaffold_1428 3 2020 bp 56.63 6.68 71.53
NECEvent2014_7_2_scaffold_1946 177_002_scaffold_1946
Order: Enterobacteriales (100%)
3 1544 bp 55.38 340.41 96.76
NECEvent2014_7_2_scaffold_1947 177_002_scaffold_1947 3 1543 bp 64.87 3.31 96.82
NECEvent2014_7_2_scaffold_2096 177_002_scaffold_2096 3 1451 bp 57.62 6.00 72.78
NECEvent2014_7_2_scaffold_1952 177_002_scaffold_1952 3 1539 bp 56.86 4.78 44.25
NECEvent2014_7_2_scaffold_2123 177_002_scaffold_2123
Species: Citrobacter freundii (66.67%)
3 1437 bp 39.32 23.07 88.31
NECEvent2014_7_2_scaffold_1976 177_002_scaffold_1976
Species: Xanthomonas axonopodis (66.67%)
3 1523 bp 63.95 4.53 90.02
NECEvent2014_7_2_scaffold_2895 177_002_scaffold_2895
Species: Escherichia coli (100%)
3 1076 bp 51.95 3.07 76.12
NECEvent2014_7_2_scaffold_2130 177_002_scaffold_2130 3 1434 bp 56.35 6.59 83.68
NECEvent2014_7_2_scaffold_2652 177_002_scaffold_2652 3 1174 bp 54.00 42.55 81.60
NECEvent2014_7_2_scaffold_1737 177_002_scaffold_1737 3 1680 bp 55.48 6.16 76.96
NECEvent2014_7_2_scaffold_2663 177_002_scaffold_2663
Species: Rhodovulum sulfidophilum (50%)
2 1171 bp 55.51 3.59 94.28
NECEvent2014_7_2_scaffold_2684 177_002_scaffold_2684
Species: Stenotrophomonas maltophilia (50%)
2 1160 bp 61.12 6.59 90.26
NECEvent2014_7_2_scaffold_2686 177_002_scaffold_2686
Species: Xanthomonas vasicola (50%)
2 1159 bp 62.99 4.14 104.57
NECEvent2014_7_2_scaffold_1258 177_002_scaffold_1258
Species: Xanthomonas alfalfae (50%)
2 2277 bp 62.58 5.80 101.05
NECEvent2014_7_2_scaffold_2691 177_002_scaffold_2691
Species: Pseudoxanthomonas spadix (50%)
2 1158 bp 67.79 6.09 76.68
NECEvent2014_7_2_scaffold_1271 177_002_scaffold_1271
Species: Pseudomonas sp. GM67 (50%)
2 2256 bp 53.63 4.92 91.22
NECEvent2014_7_2_scaffold_1786 177_002_scaffold_1786
Species: Xanthomonas sacchari (50%)
2 1645 bp 57.26 7.29 89.18
NECEvent2014_7_2_scaffold_1793 177_002_scaffold_1793
Species: Escherichia coli (50%)
2 1635 bp 54.37 49.45 67.89
NECEvent2014_7_2_scaffold_2457 177_002_scaffold_2457
Species: Enterocytozoon bieneusi (50%)
2 1257 bp 48.29 5.49 101.43
NECEvent2014_7_2_scaffold_2472 177_002_scaffold_2472
Species: Xanthomonas alfalfae (100%)
2 1249 bp 62.29 5.04 99.68
NECEvent2014_7_2_scaffold_1300 177_002_scaffold_1300
Species: Curvibacter putative symbiont of Hydra magnipapillata (50%)
2 2208 bp 50.18 5.57 100.00
NECEvent2014_7_2_scaffold_1569 177_002_scaffold_1569
Species: Klebsiella quasipneumoniae (50%)
2 1853 bp 40.47 5.42 85.00
NECEvent2014_7_2_scaffold_2998 177_002_scaffold_2998 2 1037 bp 62.58 5.93 95.76
NECEvent2014_7_2_scaffold_4280 177_002_scaffold_4280
Species: Vibrio parahaemolyticus (50%)
2 1027 bp 55.01 2735.64 39.14
NECEvent2014_7_2_scaffold_1350 177_002_scaffold_1350
Species: Acidovorax sp. MR-S7 (50%)
2 2143 bp 58.38 149.02 77.97
NECEvent2014_7_2_scaffold_2526 177_002_scaffold_2526
Species: Dickeya zeae (50%)
2 1224 bp 32.19 5.15 99.26
NECEvent2014_7_2_scaffold_2017 177_002_scaffold_2017
Species: Pseudomonas sp. C5pp (50%)
2 1493 bp 63.43 5.83 100.07
NECEvent2014_7_2_scaffold_1357 177_002_scaffold_1357
Species: Escherichia coli (100%)
2 2137 bp 46.89 33.41 73.70
NECEvent2014_7_2_scaffold_2278 177_002_scaffold_2278
Species: Xanthomonas vasicola (50%)
2 1340 bp 57.31 7.39 56.19
NECEvent2014_7_2_scaffold_2535 177_002_scaffold_2535
Species: Escherichia coli (50%)
2 1221 bp 45.86 91.65 99.02
NECEvent2014_7_2_scaffold_2554 177_002_scaffold_2554
Species: Janthinobacterium agaricidamnosum (50%)
2 1212 bp 62.05 6.31 100.00
NECEvent2014_7_2_scaffold_2556 177_002_scaffold_2556
Species: Stenotrophomonas sp. RIT309 (50%)
2 1211 bp 65.40 5.95 96.37
NECEvent2014_7_2_scaffold_1648 177_002_scaffold_1648
Species: Achromobacter insuavis (50%)
2 1776 bp 61.20 5.57 53.21
NECEvent2014_7_2_scaffold_2311 177_002_scaffold_2311
Species: GWC1_Treponema_61_84_curated (50%)
2 1320 bp 59.92 5.11 82.05
NECEvent2014_7_2_scaffold_1398 177_002_scaffold_1398 2 2069 bp 38.33 29.94 54.81
NECEvent2014_7_2_scaffold_2073 177_002_scaffold_2073
Species: Xanthomonas axonopodis (50%)
2 1462 bp 52.74 5.85 66.69
NECEvent2014_7_2_scaffold_1415 177_002_scaffold_1415
Species: Citrobacter amalonaticus (50%)
2 2041 bp 42.38 24.33 54.39
NECEvent2014_7_2_scaffold_2588 177_002_scaffold_2588
Species: Klebsiella quasipneumoniae (50%)
2 1196 bp 59.87 46.66 99.08
NECEvent2014_7_2_scaffold_2851 177_002_scaffold_2851
Species: blood disease bacterium R229 (50%)
2 1090 bp 62.29 4.68 67.43
NECEvent2014_7_2_scaffold_1423 177_002_scaffold_1423
Species: Escherichia coli (50%)
2 2033 bp 51.35 268.42 55.93
NECEvent2014_7_2_scaffold_1425 177_002_scaffold_1425
Species: Escherichia coli (50%)
2 2028 bp 51.43 129.73 95.86
NECEvent2014_7_2_scaffold_1426 177_002_scaffold_1426
Species: Escherichia coli (100%)
2 2028 bp 49.51 35.87 95.86
NECEvent2014_7_2_scaffold_1180 177_002_scaffold_1180
Species: Stenotrophomonas maltophilia (50%)
2 2438 bp 57.92 5.91 91.80
NECEvent2014_7_2_scaffold_2616 177_002_scaffold_2616
Species: Methylobacillus flagellatus (50%)
2 1186 bp 50.59 5.19 77.66
NECEvent2014_7_2_scaffold_2628 177_002_scaffold_2628
Species: Pseudomonas sp. GM78 (50%)
2 1180 bp 52.54 3.94 98.90
NECEvent2014_7_2_scaffold_2378 177_002_scaffold_2378
Species: Escherichia vulneris (50%)
2 1288 bp 34.47 6.99 69.64
NECEvent2014_7_2_scaffold_2124 177_002_scaffold_2124
Species: Xanthomonas alfalfae (100%)
2 1437 bp 63.26 5.43 99.79
Displaying items 51-100 of 136 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.