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NECEvent2014_7_2_scaffold_195_4

Organism: NECEvent2014_7_2_Cronobacter_sakazakii_56_411_partial

partial RP 25 / 55 MC: 4 BSCG 23 / 51 MC: 1 ASCG 10 / 38 MC: 1
Location: comp(5174..6472)

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 99.3
  • Coverage: 432.0
  • Bit_score: 862
  • Evalue 2.40e-247
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=2 Tax=Cronobacter sakazakii RepID=M1JFR1_CROSK similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 432.0
  • Bit_score: 869
  • Evalue 1.80e-249
  • rbh
rumA; 23S rRNA m(5)U1939 methyltransferase similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 432.0
  • Bit_score: 869
  • Evalue 5.10e-250
  • rbh

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Taxonomy

Cronobacter sakazakii → Cronobacter → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1299
ATGGCGCAATTCTACTCTGCAAAGCGACGCGTGACGACGCGTGAAATCATAACCGTGACGGCCGACGGCCTCGATGCCTTCGGGCAGGGCGTGGCGCGCCACCACGGCAAGGCGTTGTTCATCGCCGGTCTACTGCCAGGCGAGCACGCGGAAGTGGTGCTCAGCGAAGATAAAAAACAGTTTGCCCGCGGCGACGTGAAAAAGCGGCTTTCAGAAAGCCCCGAGCGCGAAACGCCGCGGTGTCCGCATTTTGGCGTATGCGGCGGCTGCCAGCAACAGCACGCCAGCGTGGCGCTACAGCAGCGCAGCAAGGCGCAGGCGCTGAGCCGCATGATGAAGCGCGAGGTCGATGAGGTCATCAGCGGGCCTGCGTGGGGCTACCGCCGCCGGGCGCGTCTGAGCTTGAATTTCACGCCGCGCAAACCAGGCTTACAGATGGGGTTTCGCAAGGCGGGCTCAAACGATCTGGTGGATGTGCATCGCTGCCCTGTGCTTGTGCCCCGTCTTGAGGCGTTGCTGCCGAAACTTCGCGACTGCCTGAGCAGCCTTGATGGCGTTCGTCATCTTGGCCATGTCGAACTGGTGGATGTTACCAGCGGTCCGCTGATGGTCTTGCGTCATCTCAAGCCGCTAAGCGCCGCCGATCGCGAAAAACTGGAATGCTTTTCGCATTCCGAAGGCGTGGCGCTGTACCTTGCGCCACAGAGCGATACCCTTGAGCACCTTAATGGCGAGATGCCGTGGTATGAATCCGACGGCCTGCGGCTTACCTTCAGCCCGCGCGATTTTATTCAGGTCAACGATGCTGTAAATCAGCAGATGGTGGCCCGCGCGCTGGAATGGCTGGAGATTCAGCCCGGCGAGCGGGTGCTGGATCTCTTCTGCGGCATGGGTAACTTTACGCTGCCGCTGGCCCGGCGCGCGGAAAGCGTGGTGGGCGTTGAGGGCGTTGCGGCGCTGGTGGAGAAAGGCGACTATAATGCCGGTCTTAACGCGTTGAAAAATGTCACTTTCTTTCAGCATAACCTGGAAGAAGACGTCACCCGCCAGCCGTGGGCGCAGCAAGGGTTCGACAAAGTGCTGCTCGATCCCGCGCGTGCGGGCGCGGCGGGCGTGATGCAACATATTGTGAAATTAAAACCGCGTCGGGTGGTCTATGTCTCCTGTAACCCTGCCACGCTGATGCGTGACAGTGAGACGTTGCTCGCGGCGGGCTATCGCACGGTACGGCTGGCGATGCTGGATATGTTTCCACACACTGGCCATCTGGAATCGATGGCGTTATTTGAAAGAGATTAA
PROTEIN sequence
Length: 433
MAQFYSAKRRVTTREIITVTADGLDAFGQGVARHHGKALFIAGLLPGEHAEVVLSEDKKQFARGDVKKRLSESPERETPRCPHFGVCGGCQQQHASVALQQRSKAQALSRMMKREVDEVISGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCLSSLDGVRHLGHVELVDVTSGPLMVLRHLKPLSAADREKLECFSHSEGVALYLAPQSDTLEHLNGEMPWYESDGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKVLLDPARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLESMALFERD*