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NECEvent2014_8_1_UNK

In projects: NECEvent2014_8_1
Displaying items 1-50 of 85 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
NECEvent2014_8_1_scaffold_4275
178_001_scaffold_4275
0 1084 bp 49.35 418.04 0.00
NECEvent2014_8_1_scaffold_4305
178_001_scaffold_4305
0 1077 bp 47.35 12.81 0.00
NECEvent2014_8_1_scaffold_3595
178_001_scaffold_3595
1 1295 bp 52.90 4032.28 4.86
NECEvent2014_8_1_scaffold_3718
178_001_scaffold_3718
Species: Ascaris suum (100%)
1 2056 bp 48.39 97.47 5.98
NECEvent2014_8_1_scaffold_3478
178_001_scaffold_3478
Species: Klebsiella pneumoniae (100%)
1 1345 bp 40.45 12.71 12.04
NECEvent2014_8_1_scaffold_4031
178_001_scaffold_4031
Species: [Clostridium] papyrosolvens (100%)
1 1152 bp 50.78 2736.07 13.54
NECEvent2014_8_1_scaffold_3018
178_001_scaffold_3018
Species: Streptococcus anginosus (50%)
2 1552 bp 48.07 72.78 13.98
NECEvent2014_8_1_scaffold_3733
178_001_scaffold_3733
1 1247 bp 28.47 7.46 15.64
NECEvent2014_8_1_scaffold_2753
178_001_scaffold_2753
5 1714 bp 49.12 1942.82 28.18
NECEvent2014_8_1_scaffold_3986
178_001_scaffold_3986
Species: Escherichia coli (100%)
2 1163 bp 55.37 73.90 35.08
NECEvent2014_8_1_scaffold_4163
178_001_scaffold_4163
5 1114 bp 33.30 113.64 40.31
NECEvent2014_8_1_scaffold_4334
178_001_scaffold_4334
Species: Escherichia coli (100%)
1 1071 bp 44.54 674.37 42.02
NECEvent2014_8_1_scaffold_3149
178_001_scaffold_3149
9 1486 bp 50.61 48.05 45.76
NECEvent2014_8_1_scaffold_3995
178_001_scaffold_3995
4 1161 bp 49.78 54.65 47.98
NECEvent2014_8_1_scaffold_4161
178_001_scaffold_4161
2 1115 bp 27.17 9.15 48.16
NECEvent2014_8_1_scaffold_3297
178_001_scaffold_3297
1 1421 bp 39.48 4.75 55.31
NECEvent2014_8_1_scaffold_2162
178_001_scaffold_2162
Species: Clostridium butyricum (50%)
2 2196 bp 28.42 9.43 59.70
NECEvent2014_8_1_scaffold_2006
178_001_scaffold_2006
Species: Burkholderia sp. YI23 (50%)
2 2371 bp 44.03 7.53 63.26
NECEvent2014_8_1_scaffold_2822
178_001_scaffold_2822
Species: Staphylococcus sp. DORA_6_22 (100%)
1 1673 bp 31.74 6.63 64.20
NECEvent2014_8_1_scaffold_404
178_001_scaffold_404
Order: Pseudomonadales (72.73%)
11 10055 bp 55.79 9.62 66.86
NECEvent2014_8_1_scaffold_1782
178_001_scaffold_1782
Genus: Clostridium (60%)
5 2675 bp 31.48 14.69 67.29
NECEvent2014_8_1_scaffold_2194
178_001_scaffold_2194
Order: Pseudomonadales (66.67%)
3 2167 bp 55.19 8.44 69.08
NECEvent2014_8_1_scaffold_3282
178_001_scaffold_3282
Species: Providencia sneebia (50%)
2 1428 bp 44.05 5.46 69.54
NECEvent2014_8_1_scaffold_2946
178_001_scaffold_2946
Genus: Clostridium (66.67%)
3 1601 bp 26.98 6.93 70.08
NECEvent2014_8_1_scaffold_2249
178_001_scaffold_2249
Species: Clostridium botulinum (66.67%)
3 2098 bp 27.22 11.08 70.50
NECEvent2014_8_1_scaffold_2676
178_001_scaffold_2676
3 1758 bp 27.76 7.34 71.84
NECEvent2014_8_1_scaffold_2858
178_001_scaffold_2858
Species: Dialister succinatiphilus (50%)
2 1650 bp 27.52 8.91 73.27
NECEvent2014_8_1_scaffold_2554
178_001_scaffold_2554
Species: Enterococcus faecium (100%)
2 1844 bp 29.07 3.90 74.19
NECEvent2014_8_1_scaffold_3224
178_001_scaffold_3224
5 1450 bp 32.14 7.45 76.07
NECEvent2014_8_1_scaffold_2310
178_001_scaffold_2310
Species: Clostridium botulinum (75%)
4 2035 bp 28.45 15.63 79.31
NECEvent2014_8_1_scaffold_3077
178_001_scaffold_3077
Species: Clostridium butyricum (100%)
1 1523 bp 29.22 69.63 81.35
NECEvent2014_8_1_scaffold_999
178_001_scaffold_999
Genus: Enterobacter (50%)
6 4645 bp 60.30 5.55 81.64
NECEvent2014_8_1_scaffold_1346
178_001_scaffold_1346
Domain: Bacteria (66.67%)
3 3579 bp 27.24 12.99 81.89
NECEvent2014_8_1_scaffold_1658
178_001_scaffold_1658
Species: Klebsiella pneumoniae (100%)
3 2871 bp 49.63 57.16 82.76
NECEvent2014_8_1_scaffold_2118
178_001_scaffold_2118
6 2240 bp 31.79 8.04 83.17
NECEvent2014_8_1_scaffold_1175
178_001_scaffold_1175
Species: Pseudomonas sp. MT-1 (50%)
6 4039 bp 56.00 7.39 83.19
NECEvent2014_8_1_scaffold_3857
178_001_scaffold_3857
Species: Salmonella enterica (100%)
1 1204 bp 48.09 1417.90 83.47
NECEvent2014_8_1_scaffold_57
178_001_scaffold_57
Phylum: Firmicutes (53.19%)
47 38964 bp 27.40 88.69 83.91
NECEvent2014_8_1_scaffold_276
178_001_scaffold_276
Phylum: Firmicutes (66.67%)
15 13590 bp 27.58 116.27 84.11
NECEvent2014_8_1_scaffold_1783
178_001_scaffold_1783
Species: Clostridium botulinum (100%)
2 2674 bp 30.22 17.00 84.14
NECEvent2014_8_1_scaffold_2887
178_001_scaffold_2887
Genus: Pseudomonas (66.67%)
3 1635 bp 58.84 6.79 85.32
NECEvent2014_8_1_scaffold_2349
178_001_scaffold_2349
5 2002 bp 33.17 17.68 85.76
NECEvent2014_8_1_scaffold_2230
178_001_scaffold_2230
Class: Gammaproteobacteria (100%)
3 2120 bp 59.67 6.72 85.90
NECEvent2014_8_1_scaffold_2824
178_001_scaffold_2824
Species: Clostridium butyricum (50%)
2 1671 bp 28.01 13.11 86.18
NECEvent2014_8_1_scaffold_2275
178_001_scaffold_2275
Species: Flavobacterium frigoris (100%)
2 2072 bp 29.10 14.48 86.87
NECEvent2014_8_1_scaffold_1527
178_001_scaffold_1527
Species: Enterobacter aerogenes (50%)
2 3116 bp 54.08 63.35 87.13
NECEvent2014_8_1_scaffold_3110
178_001_scaffold_3110
Species: Klebsiella pneumoniae (100%)
2 1508 bp 49.07 3.78 87.14
NECEvent2014_8_1_scaffold_2363
178_001_scaffold_2363
Species: Klebsiella pneumoniae (66.67%)
3 1985 bp 59.35 102.70 87.36
NECEvent2014_8_1_scaffold_643
178_001_scaffold_643
Species: Klebsiella pneumoniae (57.14%)
7 7161 bp 46.84 9.36 87.47
NECEvent2014_8_1_scaffold_4609
178_001_scaffold_4609
1 1000 bp 28.60 3.90 88.50
Displaying items 1-50 of 85 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.