ggKbase home page

NECEvent2014_8_2_scaffold_286

Alias: 178_002_scaffold_286

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_286_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..763
DNA (762bp) protein (254aa)
M23 peptidase domain protein n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SR46_CLOPS rbh
hypothetical protein
M23 peptidase domain protein {ECO:0000313|EMBL:ABG86637.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strai
NECEvent2014_8_2_scaffold_286_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

742..1596
DNA (855bp) protein (285aa)
M50 family peptidase (EC:3.4.24.-)
Peptidase, M50 family {ECO:0000313|EMBL:ABG86235.1}; EC=3.4.24.- {ECO:0000313|EMBL:ABG86235.1};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" s
Peptidase, M50 family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SR47_CLOPS rbh
NECEvent2014_8_2_scaffold_286_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1728..3581
DNA (1854bp) protein (618aa)
Radical SAM domain protein n=2 Tax=Clostridium perfringens RepID=Q0SR48_CLOPS rbh
Radical SAM domain protein {ECO:0000313|EMBL:ABG85517.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain
radical SAM domain-containing protein
NECEvent2014_8_2_scaffold_286_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3565..4266
DNA (702bp) protein (234aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1BRZ3_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDS79751.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1
hypothetical protein
NECEvent2014_8_2_scaffold_286_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4283..5725
DNA (1443bp) protein (481aa)
Ribonuclease, Rne/Rng family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SR50_CLOPS rbh
ribonuclease rbh
Ribonuclease, Rne/Rng family {ECO:0000313|EMBL:ABG86962.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strai
NECEvent2014_8_2_scaffold_286_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5851..6162
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=10 Tax=Clostridium perfringens RepID=RL21_CLOP1
rplU; 50S ribosomal protein L21
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
NECEvent2014_8_2_scaffold_286_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6172..6543
DNA (372bp) protein (124aa)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=Q0SR52_CLOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG87268.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM1
NECEvent2014_8_2_scaffold_286_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6547..6849
DNA (303bp) protein (101aa)
50S ribosomal protein L27 n=10 Tax=Clostridium perfringens RepID=RL27_CLOP1
rpmA; 50S ribosomal protein L27
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str
NECEvent2014_8_2_scaffold_286_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7016..8302
DNA (1287bp) protein (429aa)
GTPase Obg n=7 Tax=Clostridium perfringens RepID=OBG_CLOP1 rbh
obgE; GTPase ObgE
GTPase Obg {ECO:0000255|HAMAP-Rule:MF_01454}; GTP-binding protein Obg {ECO:0000255|HAMAP-Rule:MF_01454}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostrid
NECEvent2014_8_2_scaffold_286_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8320..8622
DNA (303bp) protein (101aa)
Uncharacterized protein n=11 Tax=Clostridium perfringens RepID=Q8XIJ3_CLOPE
putative RNA-binding protein
Putative RNA-binding protein {ECO:0000313|EMBL:EDT15284.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str.
NECEvent2014_8_2_scaffold_286_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8624..9232
DNA (609bp) protein (203aa)
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244};
Probable nicotinate-nucleotide adenylyltransferase n=8 Tax=Clostridium perfringens RepID=NADD_CLOP1 rbh
NECEvent2014_8_2_scaffold_286_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9235..9804
DNA (570bp) protein (190aa)
HD domain protein n=3 Tax=Clostridium perfringens RepID=Q0TNI8_CLOP1 rbh
HD domain-containing protein
HD domain protein {ECO:0000313|EMBL:EDT25161.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.
NECEvent2014_8_2_scaffold_286_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9827..11149
DNA (1323bp) protein (441aa)
Membrane-bound protein n=4 Tax=Clostridium perfringens RepID=H7CYE7_CLOPF rbh
Membrane-bound protein {ECO:0000313|EMBL:EIA16325.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
membrane-bound protein
NECEvent2014_8_2_scaffold_286_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11137..12033
DNA (897bp) protein (299aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium
Pseudouridine synthase, RluA family n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BLV3_CLOPF rbh
RluA family pseudouridine synthase
NECEvent2014_8_2_scaffold_286_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12065..13399)
DNA (1335bp) protein (445aa)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:EDT27820.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EDT27820.1};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Cl
dacF; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RE19_CLOPF rbh
NECEvent2014_8_2_scaffold_286_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13595..14377
DNA (783bp) protein (261aa)
Putative comE operon protein 1 n=1 Tax=Clostridium perfringens NCTC 8239 RepID=B1RLQ7_CLOPF rbh
comEA; competence protein ComE
ComE operon protein {ECO:0000313|EMBL:BAB81826.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Ty
NECEvent2014_8_2_scaffold_286_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14422..15453
DNA (1032bp) protein (344aa)
selD; selenide, water dikinase, selenocysteine-containing (EC:2.7.9.3)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:000
Selenide, water dikinase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SR62_CLOPS rbh
NECEvent2014_8_2_scaffold_286_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15470..16858
DNA (1389bp) protein (463aa)
selA; selenocysteine synthase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000255|HAMAP-Rule:MF_00423}; EC=2.9.1.1 {ECO:0000255|HAMAP-Rule:MF_00423};; Selenocysteine synthase {ECO:0000255|HAMAP-Rule:MF_00423}; Short=Sec synthase {
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=SELA_CLOPS rbh
NECEvent2014_8_2_scaffold_286_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16859..18766
DNA (1908bp) protein (636aa)
Selenocysteine-specific translation elongation factor n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RE22_CLOPF rbh
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EDT27721.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clost
selB; selenocysteine-specific translation elongation factor
NECEvent2014_8_2_scaffold_286_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18953..19402
DNA (450bp) protein (150aa)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=Q8XIK4_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB81821.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13
NECEvent2014_8_2_scaffold_286_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19430..20785
DNA (1356bp) protein (452aa)
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:ABG85920.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABG85920.1};; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiac
23S rRNA (Uracil-5-)-methyltransferase RumA n=4 Tax=Clostridium perfringens RepID=Q0TNJ7_CLOP1 rbh
NECEvent2014_8_2_scaffold_286_22
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21233..22399
DNA (1167bp) protein (389aa)
adh1; NADPH-dependent butanol dehydrogenase (EC:1.1.1.-)
Iron-containing alcohol dehydrogenase family protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VIE9_CLOBI rbh
Iron-containing alcohol dehydrogenase family protein {ECO:0000313|EMBL:EQK41263.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" s
NECEvent2014_8_2_scaffold_286_23
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22496..23740
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000381AD69
Dihydropyrimidine dehydrogenase {ECO:0000313|EMBL:KHS56682.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobact
NAD-dependent glycerol-3-phosphate dehydrogenase family protein
NECEvent2014_8_2_scaffold_286_24
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23787..24131)
DNA (345bp) protein (115aa)
HTH-type transcriptional activator hxlR n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VKF5_CLOBI
HTH-type transcriptional activator hxlR {ECO:0000313|EMBL:EQK41261.1}; TaxID=1233171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clost
HxlR family transcriptional regulator
Displaying 24 items

View Taxonomy