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NECEvent2014_8_2_scaffold_595

Alias: 178_002_scaffold_595

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_2_scaffold_595_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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40..2565
DNA (2526bp) protein (842aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RCX3_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT28385.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
Hypothetical protein
NECEvent2014_8_2_scaffold_595_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2579..5983
DNA (3405bp) protein (1135aa)
Helicase domain protein n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BQ95_CLOPF rbh
Helicase domain protein {ECO:0000313|EMBL:EDT16150.1}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1
DNA helicase
NECEvent2014_8_2_scaffold_595_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5952..7982
DNA (2031bp) protein (677aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RCX1_CLOPF rbh
Uncharacterized protein {ECO:0000313|EMBL:EDT28169.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4
conserved hypothetical protein
NECEvent2014_8_2_scaffold_595_4
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8163..9380
DNA (1218bp) protein (406aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae
putative type II modification methyltransferase (EC:2.1.1.37)
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HDC2_9CLOT rbh
NECEvent2014_8_2_scaffold_595_5
unknown

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9438..9686
DNA (249bp) protein (83aa)

This feature has no annotations

NECEvent2014_8_2_scaffold_595_6

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comp(9841..10467)
DNA (627bp) protein (209aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z6P3_CLOBU
Sigma-70 region 2 protein {ECO:0000313|EMBL:ETJ20801.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
sigma-70 region 2 domain-containing protein
NECEvent2014_8_2_scaffold_595_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10703..11116
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ARH4_CLOBU
Cell wall hydrolase {ECO:0000313|EMBL:KHD13996.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
cell wall hydrolase/autolysin
NECEvent2014_8_2_scaffold_595_8
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11124..11279
DNA (156bp) protein (52aa)
Cell wall hydrolase {ECO:0000313|EMBL:KHD13996.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
NECEvent2014_8_2_scaffold_595_9
unknown

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11224..11337
DNA (114bp) protein (38aa)

This feature has no annotations

NECEvent2014_8_2_scaffold_595_10
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11846..12478
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI000316BA9D
Uncharacterized protein {ECO:0000313|EMBL:AJG99801.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium
hypothetical protein
NECEvent2014_8_2_scaffold_595_11
Pseudomonas protegens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12855..13154
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K9Z1_PSEF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAY93106.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluore
Displaying 11 items

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