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NECEvent2014_8_3_scaffold_966_8

Organism: NECEvent2014_8_3_Clostridium_paraputrificum_30_11

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38 MC: 1
Location: 6613..7032

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Firmicutes RepID=R2DPH9_ENTFC similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 139.0
  • Bit_score: 274
  • Evalue 4.90e-71
Sigma-70 region 4 {ECO:0000313|EMBL:CDC58559.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 139.0
  • Bit_score: 274
  • Evalue 6.80e-71
putative conjugative transposon similarity KEGG
DB: KEGG
  • Identity: 62.6
  • Coverage: 139.0
  • Bit_score: 170
  • Evalue 2.80e-40

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Taxonomy

Dorea formicigenerans CAG:28 → Dorea → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 420
ATGAGGACATCTTCTTTCGAGCATATCGTCAGATTACAGTTCAATTCTTTAATGCTGATTGTCATTAAGAACAAAGTGAAAAGTCGAAACAGACAGCTTGCAAGACATTCTAAACGTGAAGTATTGTTTTGTGAAATAGCCGAAACGAAACAAGTTGAACGTGGAACGATTGATACCTGTTTTTATGATTGTGTATCATTTAAAGTCTTGCACTTTACAATTTATGTATCTGATGAAACACTTGGTACAGTTTTACATAGACTGTCAGAAAAACAGCGTAGTGCGATTTTATTACGTTATTTTCAAGGAATGAACGACAGAGAAATTTCAGAACTGTACCATGTATCACGTTCTGCTATTTGCAGTAGAAGAACTAGAGGACTAAGGAAGTTAAAAATGCTTTTGAGCGAAAGGAAGTAA
PROTEIN sequence
Length: 140
MRTSSFEHIVRLQFNSLMLIVIKNKVKSRNRQLARHSKREVLFCEIAETKQVERGTIDTCFYDCVSFKVLHFTIYVSDETLGTVLHRLSEKQRSAILLRYFQGMNDREISELYHVSRSAICSRRTRGLRKLKMLLSERK*