ggKbase home page

NECEvent2014_8_3_scaffold_1472_2

Organism: NECEvent2014_8_3_Clostridium_paraputrificum_30_11

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38 MC: 1
Location: 397..3903

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1561 species="Bacteria; Firm similarity UNIPROT
DB: UniProtKB
  • Identity: 73.4
  • Coverage: 999.99
  • Bit_score: 1743
  • Evalue 0.0
Transcription-repair coupling factor n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FPJ5_CLOPA similarity UNIREF
DB: UNIREF100
  • Identity: 74.1
  • Coverage: 999.99
  • Bit_score: 1743
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 73.9
  • Coverage: 999.99
  • Bit_score: 1742
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Clostridium baratii → Clostridium → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3507
ATGAGGTTGAGAGGGTTAATGGAACCCTTAATAAGTAGTGAAGAATTTATTGAGCTGGAATCATATATAAAAGGTGATAAACATCCTATAGAAATTGAAGGATTATCGGAATCAGGTAAATCCTATGTGATAAATGGAATATATGAAGTTAGTAACAAACCTGTTGTTATAATAACTAATAGCGATATGGAAGCTAAGAATTTATATGAAGATTTAAATTTATATTTAAGCAATGTATATTATTTCCCAGCTAAAGAAATAGTGTTTTATAATGTTGATGCAATTTCAGGAGATCTAAGATGGGCAAGGCTAAATGTAATAAAAGAAATATTATCAAATAATAAAAATATAATAGTAACATCAATTGATGCATTTGCAGCTAGATATACTCCAAAAGATCTTTTTAAAACACATACAGTTAGTATTAGTGTAGGTGATGAGGTTGATTTTAAGGAGTTATCTAAGATACTTGTTGAAGCAGGTTATGATAGAGTTGATGTTGTAGAGGGAAAAGGAGAGTTCTCACTTCGTGGAGGGCTCTTAGACTTGTTCCCTACAAATTCTATATATCCATATAGAATTGAATTGTTTGGTGATGAAATAGATTCTATAAGAACCTTTAATACAGAATCTCAAAGAAGTATTGAGAAAGTTAATTGTATCGAAGTTTTCCCTGCAAAAGAAATTATAATAGATGATGAAATTATAGATTATGCATTAAGTAACATTAGAGAAGAATTAGACTTAACATTAAAGAATAATAAGGATAAAGAAAGAGGTATTAAGTTAAATACTATTATTTCTAAGAACTTGGAAGAGCTAAGAGAAACTCATGATTTTGAAACTATAGATAGCTATTTACCATTGTTCTATAAGAAGAGTGAGAGTTTATTTGACTACTTAGAAGATTATATATTTGTTCTTGATGATAAGGTAAGATGTCTGGGTAAGTTAGATAGTACCTACTTAGAGTTTAATGAAAATTACTCTATTTTTCTTCAAAGGGGAGATATACTACCTTCTCAAGGAAAACTATTACTTGAGAAAGAAGAACTTATTGACTTATTAGAAGAAAAGATAAATATTACTATGGATGCAATTAATAAGGGAGGGGGATTCTTATCCCCTATAAGGAAGATAGAGATTAATTCTGCTATTTTGCATCATTATCAAGGTCAATTGGATTTGCTAATTGAAGATATTTTAAAGAAGAAAAAAGACGGATATAGAACAGTTATATTATCAGGTACACGAGTTAGAGGAGAAAGGCTCGTTTCTACACTTAGAGAAAGAGAAATAGAGAGTAGTTATAGAGATAATATTGAATCTATAGCATTAGGAGAAGTTGTTATAACATTTGGAAATTTATTAAAGGGATTTGAGTGCCCTAAGTATAAAACCTGCGTGATATCAGACAAAGAGGTATTTGGAGAAGCTAAAAGAAAGCTGTCTAAAAGCAAAAGTAAGAGCAAAGGTGTATCTAAAATAAAAAGCTTTGCTGAATTAAAACCTGGAGATTATGTAGTACATGTAAACCATGGAATAGGTGTATATAAGGGGATTAAACAAATAGAGGTTAGTGGACATAAGAGAGATTATCTAGATATTGTATATGATAAAGGTGATAAGTTATATGTGCCTGTTGATCAATTAGATTTAGTCCAAAAGTATATTGGAAGTGAGGGAAAATCCCCTAAAGTAAATAAACTAGGTGGAGCAGAGTGGCAAAAGGCTAAGAGTAAAGTTAAAAAATCTATCAATGAAATTGCAGAGGATTTAGTAAAACTTTATGCTGCAAGAGCTGCGGTTAAGGGATATAAATATTCAAAGGATACAGAATGGCAAATGCAGTTTGAGGATGAATTCCCGTTCCAAGAAACACCTGATCAACTATCATCAATAGAAGAAATTAAGAAGGATATGGAATCAGACAAACCAATGGATAGATTACTTTGTGGTGATGTTGGGTATGGAAAAACAGAGGTTGCTTTAAGAGCAGCATTTAAAGCTGTAATGGAAGGGAAACAAGTAGCATTTCTTGTTCCTACTACAATATTAGCTGAGCAGCATTATAAAAATATGATTAAGAGATTTTCAGATTTTCCAATTAAAATAGATATGGTAAGTAGATTTAGAACTACTAAGGAACAAAAAAGTACTTTGCAATCTGTAAAAGAAGGTAATGTAGATATTTTAGTTGGAACTCATAGATTGGTTTCTAAAGATATAGTATTTAAAGATCTAGGGCTATTAATAGTAGATGAGGAGCAACGATTTGGTGTTGCACAAAAAGAGAAAATTAAGAATCTAAAGAAGAATGTAGATGTTCTTACTTTAAGTGCTACCCCTATTCCGAGAACATTACATATGTCTTTAACTGGTGTTAGGGATATATCTGTAATAGAGACACCACCAGAGGAACGTTATCCTATACAAACTTATGTTGTTGAGCAGAATGATCAATTAATTCGAGATGCAATTATGAGAGAAATAGGTAGAGGTGGTCAAGTATACTTTGTATACAATAGGGTAGAGGATATTGAAAAAATAGCTAACTACATTAAAAATCTTGTTCCTGAAAGTAGAGTTGGAGTAGCTCATGGACAAATGACAGAAAGACAATTAGAAAAAGAAATGCTAGATTTTATGACTAATGAATATAATGTACTTGTATGTACAACTATAATTGAAACTGGAATTGACATTCAGAATGTAAATACAATTATTATATATAATGCAGATAAAATGGGATTATCTCAGTTATATCAGTTAAGAGGAAGAGTTGGTCGTTCTAATAGAATAGCATATGCTTACTTATTATATACAAAGGATAAAGTTTTAACTGAGGTTGCAGAAAAAAGGCTAAAAGCTCTTAAAGACTTTACTGAGTTAGGTTCGGGCTTTAAGATAGCTATGAGGGATCTTGAAATTAGAGGTGCTGGAAACATGATGGGATCTGCACAGCATGGACATATGGCTGCTATAGGATATGACTTGTATTGTAGAATGCTAGAAGATACAGTGAAACTAATTAAGGGTGATATTGATAAAGAACCTATAGAGACAACGGTGGACTTAAAAGTTGATGCATATATTCCATCATCATATATAGAAGATGAGATGCAAAAAATAGAAGTATATAAAAAGATTGCAGCTATAGAAAGCATAGACGAGTATATGGATATAAAAGAGGAGCTAGAGGATAGATATTCAGATATTCCAGATCCTGTTTATAACTTAATGGATATTGCATACATAAAGAGTAGAGCTAAGTTATTATCCATAGAAGAAATAAAAGAAAGCGTAAATGATGTTAGCTTTAGATTCCAAGCAGGAGACAGTGATTACGAGAAGATATTTAAAATAATAATAGAGAAGTATAAAGATAGTATAATGCTGAAGTTTGGGGAAGCACCATCCTTTATATTTAAGCTAAAAGATCAAAAGAAAGAAAACATGTTAGCTTTCTTTAAAGAGATGTTAGAAAATTTAATAAAAAATAAATAA
PROTEIN sequence
Length: 1169
MRLRGLMEPLISSEEFIELESYIKGDKHPIEIEGLSESGKSYVINGIYEVSNKPVVIITNSDMEAKNLYEDLNLYLSNVYYFPAKEIVFYNVDAISGDLRWARLNVIKEILSNNKNIIVTSIDAFAARYTPKDLFKTHTVSISVGDEVDFKELSKILVEAGYDRVDVVEGKGEFSLRGGLLDLFPTNSIYPYRIELFGDEIDSIRTFNTESQRSIEKVNCIEVFPAKEIIIDDEIIDYALSNIREELDLTLKNNKDKERGIKLNTIISKNLEELRETHDFETIDSYLPLFYKKSESLFDYLEDYIFVLDDKVRCLGKLDSTYLEFNENYSIFLQRGDILPSQGKLLLEKEELIDLLEEKINITMDAINKGGGFLSPIRKIEINSAILHHYQGQLDLLIEDILKKKKDGYRTVILSGTRVRGERLVSTLREREIESSYRDNIESIALGEVVITFGNLLKGFECPKYKTCVISDKEVFGEAKRKLSKSKSKSKGVSKIKSFAELKPGDYVVHVNHGIGVYKGIKQIEVSGHKRDYLDIVYDKGDKLYVPVDQLDLVQKYIGSEGKSPKVNKLGGAEWQKAKSKVKKSINEIAEDLVKLYAARAAVKGYKYSKDTEWQMQFEDEFPFQETPDQLSSIEEIKKDMESDKPMDRLLCGDVGYGKTEVALRAAFKAVMEGKQVAFLVPTTILAEQHYKNMIKRFSDFPIKIDMVSRFRTTKEQKSTLQSVKEGNVDILVGTHRLVSKDIVFKDLGLLIVDEEQRFGVAQKEKIKNLKKNVDVLTLSATPIPRTLHMSLTGVRDISVIETPPEERYPIQTYVVEQNDQLIRDAIMREIGRGGQVYFVYNRVEDIEKIANYIKNLVPESRVGVAHGQMTERQLEKEMLDFMTNEYNVLVCTTIIETGIDIQNVNTIIIYNADKMGLSQLYQLRGRVGRSNRIAYAYLLYTKDKVLTEVAEKRLKALKDFTELGSGFKIAMRDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTVKLIKGDIDKEPIETTVDLKVDAYIPSSYIEDEMQKIEVYKKIAAIESIDEYMDIKEELEDRYSDIPDPVYNLMDIAYIKSRAKLLSIEEIKESVNDVSFRFQAGDSDYEKIFKIIIEKYKDSIMLKFGEAPSFIFKLKDQKKENMLAFFKEMLENLIKNK*