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NECEvent2014_8_4_Clostridium_perfringens_30_8

NECEvent2014_8_4_Clostridium_perfringens_30_11
In projects: NECEvent2014_8_4

Consensus taxonomy: Clostridium perfringens  →  Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Displaying items 351-400 of 810 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
NECEvent2014_8_4_scaffold_5046
178_004_scaffold_5046
Species: Clostridium perfringens (100%)
2 1169 bp 30.54 9.11 98.55
NECEvent2014_8_4_scaffold_3768
178_004_scaffold_3768
Species: Clostridium perfringens (100%)
2 1642 bp 27.65 6.76 96.65
NECEvent2014_8_4_scaffold_4536
178_004_scaffold_4536
Species: Clostridium perfringens (100%)
2 1317 bp 30.90 6.83 99.09
NECEvent2014_8_4_scaffold_4281
178_004_scaffold_4281
Species: Clostridium perfringens (100%)
2 1413 bp 29.23 5.10 95.75
NECEvent2014_8_4_scaffold_5561
178_004_scaffold_5561
Species: Clostridium perfringens (100%)
2 1036 bp 28.47 7.24 95.27
NECEvent2014_8_4_scaffold_2746
178_004_scaffold_2746
Species: Clostridium perfringens (100%)
2 2364 bp 29.48 7.87 87.06
NECEvent2014_8_4_scaffold_3514
178_004_scaffold_3514
Species: Clostridium perfringens (100%)
2 1764 bp 29.93 6.80 99.83
NECEvent2014_8_4_scaffold_4284
178_004_scaffold_4284
Species: Clostridium perfringens (100%)
2 1413 bp 30.43 4.78 79.19
NECEvent2014_8_4_scaffold_4030
178_004_scaffold_4030
Species: Clostridium perfringens (100%)
2 1526 bp 28.31 8.06 93.38
NECEvent2014_8_4_scaffold_5566
178_004_scaffold_5566
Species: Clostridium perfringens (100%)
2 1035 bp 31.79 11.16 75.94
NECEvent2014_8_4_scaffold_5567
178_004_scaffold_5567
Species: Clostridium perfringens (100%)
2 1035 bp 27.44 5.80 99.71
NECEvent2014_8_4_scaffold_3008
178_004_scaffold_3008
Species: Clostridium perfringens (100%)
2 2104 bp 31.56 8.98 93.25
NECEvent2014_8_4_scaffold_2753
178_004_scaffold_2753
Species: Clostridium perfringens (100%)
2 2352 bp 30.44 12.95 72.19
NECEvent2014_8_4_scaffold_5057
178_004_scaffold_5057
Species: Clostridium perfringens (100%)
2 1165 bp 29.01 5.92 87.30
NECEvent2014_8_4_scaffold_4034
178_004_scaffold_4034
Species: Clostridium perfringens (100%)
2 1524 bp 30.77 10.24 81.30
NECEvent2014_8_4_scaffold_4291
178_004_scaffold_4291
Species: Clostridium perfringens (100%)
2 1411 bp 28.63 7.44 86.96
NECEvent2014_8_4_scaffold_5315
178_004_scaffold_5315
Species: Clostridium perfringens (100%)
2 1092 bp 30.95 6.73 91.48
NECEvent2014_8_4_scaffold_5316
178_004_scaffold_5316
Species: Clostridium perfringens (100%)
2 1091 bp 28.32 5.64 99.82
NECEvent2014_8_4_scaffold_5317
178_004_scaffold_5317
Species: Anaerococcus vaginalis (50%)
2 1091 bp 28.05 4.12 61.04
NECEvent2014_8_4_scaffold_1222
178_004_scaffold_1222
Species: Clostridium perfringens (100%)
2 5257 bp 33.76 14.38 89.65
NECEvent2014_8_4_scaffold_4294
178_004_scaffold_4294
Species: Clostridium perfringens (100%)
2 1409 bp 23.07 6.81 84.95
NECEvent2014_8_4_scaffold_968
178_004_scaffold_968
Species: Clostridium perfringens (100%)
2 6730 bp 32.62 9.63 97.98
NECEvent2014_8_4_scaffold_1224
178_004_scaffold_1224
Species: Clostridium perfringens (100%)
2 5242 bp 30.48 9.10 94.32
NECEvent2014_8_4_scaffold_5320
178_004_scaffold_5320
Species: Clostridium perfringens (100%)
2 1090 bp 27.34 6.06 100.73
NECEvent2014_8_4_scaffold_5576
178_004_scaffold_5576
Species: Clostridium perfringens (100%)
2 1033 bp 29.53 8.42 74.35
NECEvent2014_8_4_scaffold_4810
178_004_scaffold_4810
Species: Clostridium perfringens (100%)
2 1236 bp 28.72 7.28 78.64
NECEvent2014_8_4_scaffold_5579
178_004_scaffold_5579
Species: Clostridium perfringens (100%)
2 1032 bp 28.97 5.38 70.06
NECEvent2014_8_4_scaffold_4300
178_004_scaffold_4300
Species: Clostridium perfringens (100%)
2 1407 bp 29.64 5.76 97.87
NECEvent2014_8_4_scaffold_1485
178_004_scaffold_1485
Species: Clostridium perfringens (100%)
2 4244 bp 30.61 7.56 94.44
NECEvent2014_8_4_scaffold_2766
178_004_scaffold_2766
Species: Clostridium perfringens (100%)
2 2338 bp 30.50 7.31 87.38
NECEvent2014_8_4_scaffold_3022
178_004_scaffold_3022
Species: Clostridium perfringens (100%)
2 2092 bp 30.98 7.31 84.46
NECEvent2014_8_4_scaffold_3534
178_004_scaffold_3534
Species: Clostridium perfringens (100%)
2 1758 bp 31.06 8.36 90.10
NECEvent2014_8_4_scaffold_3790
178_004_scaffold_3790
Species: Clostridium perfringens (100%)
2 1631 bp 31.33 10.30 96.75
NECEvent2014_8_4_scaffold_3024
178_004_scaffold_3024
Species: Clostridium perfringens (100%)
2 2091 bp 29.41 8.03 78.48
NECEvent2014_8_4_scaffold_3280
178_004_scaffold_3280
Species: Clostridium perfringens (100%)
2 1909 bp 29.13 6.76 99.79
NECEvent2014_8_4_scaffold_4048
178_004_scaffold_4048
Species: Clostridium perfringens (100%)
2 1518 bp 29.31 3.75 98.42
NECEvent2014_8_4_scaffold_5072
178_004_scaffold_5072
Species: Clostridium perfringens (100%)
2 1160 bp 28.53 5.95 71.90
NECEvent2014_8_4_scaffold_5585
178_004_scaffold_5585
Species: Clostridium perfringens (100%)
2 1032 bp 30.43 6.40 88.08
NECEvent2014_8_4_scaffold_5074
178_004_scaffold_5074
Species: Clostridium perfringens (100%)
2 1159 bp 24.50 6.99 95.51
NECEvent2014_8_4_scaffold_3027
178_004_scaffold_3027
Species: Clostridium perfringens (100%)
2 2087 bp 28.99 5.61 99.33
NECEvent2014_8_4_scaffold_3539
178_004_scaffold_3539
Species: Clostridium perfringens (100%)
2 1756 bp 31.72 8.54 94.31
NECEvent2014_8_4_scaffold_3028
178_004_scaffold_3028
Species: Clostridium perfringens (100%)
2 2086 bp 27.56 3.88 96.07
NECEvent2014_8_4_scaffold_4053
178_004_scaffold_4053
Species: Clostridium perfringens (100%)
2 1517 bp 30.19 6.33 94.33
NECEvent2014_8_4_scaffold_4568
178_004_scaffold_4568
Species: Clostridium perfringens (100%)
2 1307 bp 27.47 5.28 82.63
NECEvent2014_8_4_scaffold_4313
178_004_scaffold_4313
Species: Clostridium perfringens (100%)
2 1402 bp 28.53 8.99 82.81
NECEvent2014_8_4_scaffold_4569
178_004_scaffold_4569
Species: Finegoldia magna (50%)
2 1306 bp 32.16 5.05 89.36
NECEvent2014_8_4_scaffold_4825
178_004_scaffold_4825
Species: Clostridium perfringens (100%)
2 1230 bp 29.35 5.00 99.76
NECEvent2014_8_4_scaffold_5337
178_004_scaffold_5337
Species: Clostridium perfringens (100%)
2 1085 bp 28.76 4.98 96.77
NECEvent2014_8_4_scaffold_2266
178_004_scaffold_2266
Species: Clostridium perfringens (100%)
2 2892 bp 27.77 6.74 81.64
NECEvent2014_8_4_scaffold_4314
178_004_scaffold_4314
Species: Clostridium perfringens (100%)
2 1402 bp 26.11 6.21 98.22
Displaying items 351-400 of 810 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.