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NECEvent2014_8_4_scaffold_20

Alias: 178_004_scaffold_20

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_20_trna_4
unknown

Not on your lists

comp(27..98)
DNA (72bp)
transferRNA
NECEvent2014_8_4_scaffold_20_trna_3
unknown

Not on your lists

comp(107..179)
DNA (73bp)
transferRNA
NECEvent2014_8_4_scaffold_20_trna_2
unknown

Not on your lists

comp(187..260)
DNA (74bp)
transferRNA
NECEvent2014_8_4_scaffold_20_trna_1
unknown

Not on your lists

comp(346..418)
DNA (73bp)
transferRNA
NECEvent2014_8_4_scaffold_20_1
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(596..1090)
DNA (495bp) protein (165aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
Phosphoesterase, MJ0936 family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TWC6_9CLOT
phosphodiesterase
NECEvent2014_8_4_scaffold_20_2
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1092..1703)
DNA (612bp) protein (204aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A1Q2_CLOBU
rdgB; non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
NECEvent2014_8_4_scaffold_20_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1705..2454)
DNA (750bp) protein (250aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS
Ribonuclease PH n=2 Tax=Clostridium botulinum B RepID=RNPH_CLOBB rbh
NECEvent2014_8_4_scaffold_20_4
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2472..3449)
DNA (978bp) protein (326aa)
Hydrogenase maturation factor n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8B9_9CLOT
Hydrogenase maturation factor {ECO:0000313|EMBL:EKQ51834.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley M
AIR synthase-like protein
NECEvent2014_8_4_scaffold_20_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3478..5061
DNA (1584bp) protein (528aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9YS37_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30426.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_4_scaffold_20_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5071..6567)
DNA (1497bp) protein (499aa)
Putative extracellular solute-binding protein n=1 Tax=Clostridium botulinum (strain Eklund 17B / Type B) RepID=B2TJ02_CLOBB
extracellular solute-binding protein
Putative extracellular solute-binding protein {ECO:0000313|EMBL:ACD21762.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium b
NECEvent2014_8_4_scaffold_20_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6710..7021
DNA (312bp) protein (104aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1R0A5_CLOBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84103.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.
NECEvent2014_8_4_scaffold_20_8
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7166..7435)
DNA (270bp) protein (90aa)
Membrane protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FSL1_CLOPA
Membrane protein {ECO:0000313|EMBL:ETD67289.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
NECEvent2014_8_4_scaffold_20_9
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7437..9428)
DNA (1992bp) protein (664aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=457396 species="Bacteria
ligA; DNA ligase LigA (EC:6.5.1.2)
DNA ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HC55_9CLOT rbh
NECEvent2014_8_4_scaffold_20_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9449..11698)
DNA (2250bp) protein (750aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.4.12)
ATP-dependent DNA helicase PcrA n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U8B7_9CLOT rbh
NECEvent2014_8_4_scaffold_20_11
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11774..12451)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIN0_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKY27550.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
NECEvent2014_8_4_scaffold_20_12
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12583..13035
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2D5F0_9FIRM
putative lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:ERI91553.1}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F0540.;"
NECEvent2014_8_4_scaffold_20_13
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13104..13664
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2EJL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGK83838.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
hypothetical protein
NECEvent2014_8_4_scaffold_20_14
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13845..15506
DNA (1662bp) protein (554aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:
glnS; glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=4 Tax=Clostridium perfringens RepID=SYQ_CLOP1
NECEvent2014_8_4_scaffold_20_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15514..15906
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H8U0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99325.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
NECEvent2014_8_4_scaffold_20_16
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15949..17604)
DNA (1656bp) protein (552aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1351755 species="Bacteria; F
Glutamate--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FB28_9CLOT rbh
glutamyl-tRNA synthetase
NECEvent2014_8_4_scaffold_20_17
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18292..19008)
DNA (717bp) protein (239aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
rluB1; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.19)
Pseudouridine synthase n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JGR2_CLOBU
NECEvent2014_8_4_scaffold_20_18
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19199..19888)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XYF1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00622.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
lytic murein transglycosylase
NECEvent2014_8_4_scaffold_20_19
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19899..21902)
DNA (2004bp) protein (668aa)
Putative Two component regulator three Y motif protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EWG3_9CLOT rbh
Putative Two component regulator three Y motif protein {ECO:0000313|EMBL:CDG00551.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clo
Y Y Y domain protein
NECEvent2014_8_4_scaffold_20_20
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22041..22487)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FT16_CLOPA
UPF0178 protein LF65_00377 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clos
hypothetical protein
NECEvent2014_8_4_scaffold_20_21
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22489..23838)
DNA (1350bp) protein (450aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|R
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=5 Tax=Clostridium butyricum RepID=B1R095_CLOBU
NECEvent2014_8_4_scaffold_20_22
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24131..25417)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEH8_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH96581.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
putative membrane protein
NECEvent2014_8_4_scaffold_20_23
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25584..27125)
DNA (1542bp) protein (514aa)
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKX0_CLOSA
NECEvent2014_8_4_scaffold_20_24
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27189..28643)
DNA (1455bp) protein (485aa)
guaB; inosine 5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=1 Tax=Clostridium colicanis 209318 RepID=N9XXK4_9CLOT rbh
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:
NECEvent2014_8_4_scaffold_20_25
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28992..30104)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WCA3_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ00631.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
NECEvent2014_8_4_scaffold_20_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30114..30650)
DNA (537bp) protein (179aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XYG6_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82296.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.
Displaying items 1-30 of 74 in total

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