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NECEvent2014_8_4_scaffold_39

Alias: 178_004_scaffold_39

Search features with annotation key words

Displaying items 31-60 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_39_31
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27790..29256
DNA (1467bp) protein (489aa)
UPF0061 protein CLL_A1414 n=2 Tax=Clostridium botulinum B RepID=Y1414_CLOBB rbh
UPF0061 protein U728_90 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
NECEvent2014_8_4_scaffold_39_32
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29471..29683
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ICZ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60563.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Fe2+ transport system protein A
NECEvent2014_8_4_scaffold_39_33
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29706..29927
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ICZ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60564.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
hypothetical protein
NECEvent2014_8_4_scaffold_39_34
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29940..32138
DNA (2199bp) protein (733aa)
Ferrous iron transport protein B n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADW6_9FIRM rbh
Ferrous iron transport protein B {ECO:0000313|EMBL:EDQ95462.1}; TaxID=445973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibacter.;" source="Intestinibacter
ferrous iron transporter B
NECEvent2014_8_4_scaffold_39_35
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32142..32609
DNA (468bp) protein (156aa)
Fur family transcriptional regulator, ferric uptake regulator n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KB26_9FIRM
Fur family transcriptional regulator, ferric uptake regulator {ECO:0000313|EMBL:EGN40232.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospi
ferric uptake regulator family protein
NECEvent2014_8_4_scaffold_39_36
unknown

Not on your lists

32606..32755
DNA (150bp) protein (50aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_39_37
unknown

Not on your lists

comp(32876..33322)
DNA (447bp) protein (149aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_39_38
Bacillus mycoides, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

33572..34378
DNA (807bp) protein (269aa)
Uncharacterized protein n=3 Tax=Clostridium acetobutylicum RepID=Q97HH8_CLOAB
Uncharacterized protein {ECO:0000313|EMBL:KFM95618.1}; TaxID=1405 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus mycoides.;"
hypothetical protein
NECEvent2014_8_4_scaffold_39_39
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34666..36618
DNA (1953bp) protein (651aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
Threonine--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EXK1_9CLOT rbh
thrS2; threonyl-tRNA synthetase
NECEvent2014_8_4_scaffold_39_40
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36678..36896
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QA75_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY24630.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
NECEvent2014_8_4_scaffold_39_41
Anaerotruncus sp. CAG:528, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37250..37582
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. CAG:528 RepID=R5XB23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA12828.1}; TaxID=1262700 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotr
hypothetical protein
NECEvent2014_8_4_scaffold_39_42
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37653..38846)
DNA (1194bp) protein (398aa)
Transposase Int-Tn n=2 Tax=Clostridium difficile RepID=T3IDM4_CLODI rbh
Integrase {ECO:0000313|EMBL:CDF47256.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium
Site-specific recombinase XerD
NECEvent2014_8_4_scaffold_39_43
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38925..39131)
DNA (207bp) protein (69aa)
Excisionase n=1 Tax=Clostridium difficile RepID=V5ZEM7_CLODI
Excisionase {ECO:0000313|EMBL:CDF47257.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridi
Excisionase from transposon Tn916.
NECEvent2014_8_4_scaffold_39_44
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39124..40356)
DNA (1233bp) protein (411aa)
Putative topoisomerase n=1 Tax=Clostridium difficile RepID=V5ZEW3_CLODI rbh
Putative topoisomerase {ECO:0000313|EMBL:CDF47258.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile
hypothetical protein
NECEvent2014_8_4_scaffold_39_45
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40793..41413
DNA (621bp) protein (207aa)
DNA-binding helix-turn-helix protein n=11 Tax=Firmicutes RepID=E2SHM4_9FIRM rbh
Transcriptional regulator, PbsX family {ECO:0000313|EMBL:EGB93684.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;
Transcriptional regulator
NECEvent2014_8_4_scaffold_39_46
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

41755..42390
DNA (636bp) protein (212aa)
Putative TetR family transcriptional regulator n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SBM9_9FIRM rbh
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:CDC58563.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" s
putative TetR family transcriptional regulator
NECEvent2014_8_4_scaffold_39_47
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42497..43735
DNA (1239bp) protein (413aa)
Major facilitator superfamily transporter n=9 Tax=Firmicutes RepID=R6ST56_9FIRM rbh
Major facilitator superfamily transporter {ECO:0000313|EMBL:CDC58561.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source
macrolide-efflux protein
NECEvent2014_8_4_scaffold_39_48
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

43962..44381
DNA (420bp) protein (140aa)
Sigma-70 family RNA polymerase sigma factor n=2 Tax=Firmicutes RepID=R2DPH9_ENTFC
Sigma-70 region 4 {ECO:0000313|EMBL:CDC58559.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans
putative conjugative transposon
NECEvent2014_8_4_scaffold_39_49
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

44386..44625
DNA (240bp) protein (80aa)
Uncharacterized protein n=13 Tax=Firmicutes RepID=E2SHM8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW05226.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp.
putative conjugative transposon protein
NECEvent2014_8_4_scaffold_39_50
unknown

Not on your lists

44865..44987
DNA (123bp) protein (41aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_39_51
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

45018..46022
DNA (1005bp) protein (335aa)
Aminoglycoside phosphotransferase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PU21_9CLOT rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:EET87221.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivora
aminoglycoside phosphotransferase
NECEvent2014_8_4_scaffold_39_52
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46060..46611
DNA (552bp) protein (184aa)
Acetyltransferase (Isoleucine patch superfamily) protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCD3_9GAMM
Acetyltransferase (Isoleucine patch superfamily) protein {ECO:0000313|EMBL:EAR10199.1}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED
hypothetical protein
NECEvent2014_8_4_scaffold_39_53
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

46833..47597
DNA (765bp) protein (255aa)
Ferredoxin n=2 Tax=Clostridium botulinum B RepID=B2TPS9_CLOBB rbh
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ACD22373.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type
NECEvent2014_8_4_scaffold_39_54
unknown

Not on your lists

comp(47712..47993)
DNA (282bp) protein (94aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_39_55
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(48109..50019)
DNA (1911bp) protein (637aa)
ABC transporter, permease/ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YUF1_9CLOT rbh
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EGB94521.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
ABC transporter
NECEvent2014_8_4_scaffold_39_56
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(50012..51763)
DNA (1752bp) protein (584aa)
ABC transporter, permease/ATP-binding protein n=1 Tax=Clostridium sp. D5 RepID=F0YUF0_9CLOT rbh
ABC transporter, permease/ATP-binding protein {ECO:0000313|EMBL:EGB94520.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium s
multidrug ABC transporter ATPase/permease
NECEvent2014_8_4_scaffold_39_57
Desulfitobacterium dehalogenans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(51868..52380)
DNA (513bp) protein (171aa)
Transcriptional regulator n=1 Tax=Desulfitobacterium dehalogenans (strain ATCC 51507 / DSM 9161 / JW/IU-DC1) RepID=I4A894_DESDJ
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AFM00179.1}; TaxID=756499 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dehalog
NECEvent2014_8_4_scaffold_39_58
Parvimonas sp. oral taxon 110, Parvimonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

52466..53098
DNA (633bp) protein (211aa)
CAAX amino terminal protease family protein n=1 Tax=Parvimonas sp. oral taxon 110 str. F0139 RepID=F5TAU6_9FIRM
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EGL38533.1}; TaxID=767100 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Parvimonas.;" source="Parvimonas sp.
CAAX protease
NECEvent2014_8_4_scaffold_39_59
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

53119..54423
DNA (1305bp) protein (435aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum F RepID=A7GBB2_CLOBL rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS39573.1}; TaxID=441772 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Lange
NECEvent2014_8_4_scaffold_39_60
Paenibacillus sp. FSL H8-237, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

54517..55335
DNA (819bp) protein (273aa)
Acetyltransferase GNAT family protein n=1 Tax=Haloplasma contractile SSD-17B RepID=F7PVV2_9BACT
GNAT family acetyltransferase {ECO:0000313|EMBL:ETT65984.1}; TaxID=1227350 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H8-237.;
Displaying items 31-60 of 63 in total

View Taxonomy