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NECEvent2014_8_4_scaffold_277

Alias: 178_004_scaffold_277

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_4_scaffold_277_trna_1
unknown

Not on your lists

20..91
DNA (72bp)
transferRNA
NECEvent2014_8_4_scaffold_277_trna_2
unknown

Not on your lists

104..176
DNA (73bp)
transferRNA
NECEvent2014_8_4_scaffold_277_trna_3
unknown

Not on your lists

188..261
DNA (74bp)
transferRNA
NECEvent2014_8_4_scaffold_277_1
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(344..1324)
DNA (981bp) protein (327aa)
DNA replication protein DnaC, putative n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6M3J5_CLOB8
DNA replication protein DnaC
DNA replication protein DnaC, putative {ECO:0000313|EMBL:ABR37175.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerin
NECEvent2014_8_4_scaffold_277_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1317..2309)
DNA (993bp) protein (331aa)
DNA replication protein DnaD n=2 Tax=Clostridium botulinum B RepID=B2TRD8_CLOBB
DNA replication protein DnaD {ECO:0000313|EMBL:KJU71758.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
DnaD domain protein
NECEvent2014_8_4_scaffold_277_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2474..3667
DNA (1194bp) protein (398aa)
Peptidase, M23/M37 family n=2 Tax=Clostridium botulinum B RepID=B2TRD7_CLOBB rbh
peptidase, M23/M37 family
Membrane proteins related to metalloendopeptidases {ECO:0000313|EMBL:CDH92422.1}; Peptidase, M23/M37 family {ECO:0000313|EMBL:ACD23126.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clost
NECEvent2014_8_4_scaffold_277_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3664..4857)
DNA (1194bp) protein (398aa)
Subtilase family protein n=2 Tax=Clostridium botulinum B RepID=B2TRD6_CLOBB
subtilase family protein
Putative alkaline serine protease {ECO:0000313|EMBL:CDH92421.1}; Subtilase family protein {ECO:0000313|EMBL:ACD22144.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostrid
NECEvent2014_8_4_scaffold_277_5
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4951..5766)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XKM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00218.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
fold6; putative Zn-dependent hydrolase of the beta-lactamase Fold protein
NECEvent2014_8_4_scaffold_277_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5783..6214)
DNA (432bp) protein (144aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1QTH1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ30247.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
hypothetical protein
NECEvent2014_8_4_scaffold_277_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6303..6755)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H5A7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99686.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
dUTPase superfamily
NECEvent2014_8_4_scaffold_277_8
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6923..7465)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CBE4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOR24516.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
hypothetical protein
NECEvent2014_8_4_scaffold_277_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7787..9052
DNA (1266bp) protein (422aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylp
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=4 Tax=Clostridium butyricum RepID=B1QTG8_CLOBU
NECEvent2014_8_4_scaffold_277_10
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9069..9860
DNA (792bp) protein (264aa)
yycJ; putative metallo-hydrolase YycJ (EC:3.-.-.-)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XKM8_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:ENZ00223.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
NECEvent2014_8_4_scaffold_277_11
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9890..10387
DNA (498bp) protein (166aa)
Preprotein translocase subunit SecA n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1N823_9CLOT
preprotein translocase subunit SecA
Preprotein translocase subunit SecA {ECO:0000313|EMBL:AGF59517.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoper
NECEvent2014_8_4_scaffold_277_12
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10472..11113
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H4V3_9CLOT rbh
Uncharacterized protein {ECO:0000313|EMBL:EEH99692.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
NECEvent2014_8_4_scaffold_277_13
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11184..11723
DNA (540bp) protein (180aa)
Heat shock protein n=1 Tax=Clostridium intestinale URNW RepID=U2PQ94_9CLOT
Heat shock protein {ECO:0000313|EMBL:ERK28585.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
hypothetical protein
NECEvent2014_8_4_scaffold_277_14
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11784..12263
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rR
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ENZ8_9CLOT
rlmH; rRNA large subunit m3Psi methyltransferase RlmH
NECEvent2014_8_4_scaffold_277_15
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12404..14002
DNA (1599bp) protein (533aa)
Amidohydrolase family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QJM6_9CLOT rbh
Amidohydrolase family protein {ECO:0000313|EMBL:EKY28214.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.
amidohydrolase
NECEvent2014_8_4_scaffold_277_16
unknown

Not on your lists

13959..14234
DNA (276bp) protein (92aa)

This feature has no annotations

NECEvent2014_8_4_scaffold_277_17
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14376..14672
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EL67_CLOPA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERK31350.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
NECEvent2014_8_4_scaffold_277_18
Solobacterium moorei, Solobacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14949..16166
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Solobacterium moorei F0204 RepID=E7MQY4_9FIRM rbh
Uncharacterized protein {ECO:0000313|EMBL:EFW23477.1}; TaxID=706433 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Solobacterium.;" source="Solobacterium moo
Predicted ATP-grasp enzyme
NECEvent2014_8_4_scaffold_277_19
Shuttleworthia sp. MSX8B, Shuttleworthia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16170..16880
DNA (711bp) protein (237aa)
Aspartate racemase {ECO:0000313|EMBL:EUB16793.1}; EC=5.1.1.13 {ECO:0000313|EMBL:EUB16793.1};; TaxID=936574 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Shuttleworthia.;"
aspartate racemase (EC:5.1.1.13)
Aspartate racemase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GA04_9FIRM
NECEvent2014_8_4_scaffold_277_20
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16904..18448
DNA (1545bp) protein (515aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|SAAS:SAAS00276926};; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospi
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BAV7_9FIRM rbh
Displaying 23 items

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