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NECEvent2014_8_5_UNK

In projects: NECEvent2014_8_5

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 34.82 Longest contig: 11.70 Kbp Bin length: 441.32 Kbp GC content: 33.80 %
Contigs count: 187 Features count: 583 rRNAs count: 5 tRNAs count: 33

Genome completeness

partial RP 0 / 55 BSCG 0 / 51 ASCG 2 / 38 MC: 1
Displaying items 101-150 of 187 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_8_5_scaffold_3804 178_005_scaffold_3804
Species: Peptoniphilus lacrimalis (66.67%)
3 2195 bp 28.70 16.54 92.53
NECEvent2014_8_5_scaffold_5742 178_005_scaffold_5742
Species: Ruminococcus lactaris (50%)
2 1183 bp 41.17 8.50 99.15
NECEvent2014_8_5_scaffold_6093 178_005_scaffold_6093
Species: Bulleidia extructa (50%)
2 1069 bp 30.78 13.33 94.57
NECEvent2014_8_5_scaffold_6350 178_005_scaffold_6350
Species: human gut metagenome (100%)
2 1003 bp 32.50 2.39 83.75
NECEvent2014_8_5_scaffold_6099 178_005_scaffold_6099
Species: Escherichia coli (50%)
2 1068 bp 41.76 50.00 83.71
NECEvent2014_8_5_scaffold_4100 178_005_scaffold_4100
Species: Peptoniphilus duerdenii (50%)
2 1965 bp 29.82 6.79 89.92
NECEvent2014_8_5_scaffold_4874 178_005_scaffold_4874
Species: Clostridium sp. CAG:265 (50%)
2 1513 bp 24.98 5.75 72.57
NECEvent2014_8_5_scaffold_3600 178_005_scaffold_3600
Species: Roseburia inulinivorans (100%)
2 2369 bp 36.72 6.90 97.13
NECEvent2014_8_5_scaffold_5028 178_005_scaffold_5028
Species: Escherichia hermannii (50%)
2 1451 bp 35.84 12.61 99.04
NECEvent2014_8_5_scaffold_5284 178_005_scaffold_5284
Species: Coprococcus catus (50%)
2 1335 bp 45.62 8.20 100.00
NECEvent2014_8_5_scaffold_4645 178_005_scaffold_4645
Species: Staphylococcus aureus (50%)
2 1628 bp 33.17 15.85 79.05
NECEvent2014_8_5_scaffold_4651 178_005_scaffold_4651
Species: Peptoniphilus duerdenii (50%)
2 1624 bp 31.65 9.24 92.18
NECEvent2014_8_5_scaffold_5048 178_005_scaffold_5048
Species: Clostridiales bacterium S5-A11 (100%)
2 1441 bp 33.45 8.43 100.35
NECEvent2014_8_5_scaffold_3376 178_005_scaffold_3376
Species: Mageeibacillus indolicus (100%)
2 2579 bp 22.22 8.14 95.97
NECEvent2014_8_5_scaffold_6184 178_005_scaffold_6184
Species: Clostridium perfringens (50%)
2 1046 bp 22.47 6.60 86.90
NECEvent2014_8_5_scaffold_5581 178_005_scaffold_5581
Species: Coprococcus catus (100%)
2 1232 bp 36.69 6.57 86.20
NECEvent2014_8_5_scaffold_4940 178_005_scaffold_4940
Species: Enterobacter cloacae (50%)
2 1486 bp 56.53 44.01 98.52
NECEvent2014_8_5_scaffold_5855 178_005_scaffold_5855
Species: Escherichia vulneris (50%)
2 1144 bp 51.49 3.41 70.02
NECEvent2014_8_5_scaffold_5354 178_005_scaffold_5354
Species: Anaerococcus hydrogenalis (100%)
2 1308 bp 28.29 13.30 48.39
NECEvent2014_8_5_scaffold_5871 178_005_scaffold_5871
Species: Finegoldia magna (50%)
2 1137 bp 30.87 5.80 91.82
NECEvent2014_8_5_scaffold_5878 178_005_scaffold_5878
Species: Enterobacter cloacae (50%)
2 1134 bp 57.23 10.45 98.15
NECEvent2014_8_5_scaffold_5119 178_005_scaffold_5119
Species: Peptoniphilus sp. BV3AC2 (100%)
2 1406 bp 35.42 11.31 78.09
NECEvent2014_8_5_scaffold_6239 178_005_scaffold_6239
Species: Peptostreptococcus sp. MV1 (50%)
2 1031 bp 28.32 51.50 82.35
NECEvent2014_8_5_scaffold_6248 178_005_scaffold_6248
Species: Streptococcus anginosus (50%)
2 1030 bp 47.38 170.97 21.07
NECEvent2014_8_5_scaffold_4994 178_005_scaffold_4994
Species: Gardnerella vaginalis (50%)
2 1466 bp 28.17 5.53 96.18
NECEvent2014_8_5_scaffold_4743 178_005_scaffold_4743
Species: Coprococcus catus (100%)
2 1573 bp 34.20 7.63 94.79
NECEvent2014_8_5_scaffold_5393 178_005_scaffold_5393
Species: Clostridiales bacterium S7-1-4 (50%)
2 1293 bp 26.53 6.61 66.13
NECEvent2014_8_5_scaffold_4751 178_005_scaffold_4751
Species: human gut metagenome (100%)
2 1568 bp 24.49 8.51 95.85
NECEvent2014_8_5_scaffold_6011 178_005_scaffold_6011
Species: Coprococcus sp. CAG:131 (50%)
2 1092 bp 21.89 4.95 93.13
NECEvent2014_8_5_scaffold_6014 178_005_scaffold_6014
Species: human gut metagenome (100%)
2 1091 bp 27.04 10.04 99.54
NECEvent2014_8_5_scaffold_6018 178_005_scaffold_6018
Species: CG_Moran_02 (50%)
2 1089 bp 22.96 8.26 103.86
NECEvent2014_8_5_scaffold_5161 178_005_scaffold_5161
Species: Anaerococcus hydrogenalis (50%)
2 1384 bp 29.19 16.47 92.99
NECEvent2014_8_5_scaffold_5162 178_005_scaffold_5162
Species: Clostridiales bacterium S7-1-4 (50%)
2 1382 bp 33.50 8.47 91.61
NECEvent2014_8_5_scaffold_6030 178_005_scaffold_6030
Species: Varibaculum cambriense (50%)
2 1084 bp 58.95 1.94 97.97
NECEvent2014_8_5_scaffold_4784 178_005_scaffold_4784
Species: Bacillus cereus (50%)
2 1553 bp 30.01 8.89 92.14
NECEvent2014_8_5_scaffold_3256 178_005_scaffold_3256
Species: Clostridiales bacterium S7-1-4 (100%)
2 2707 bp 31.03 8.76 100.96
NECEvent2014_8_5_scaffold_5187 178_005_scaffold_5187
Species: Finegoldia magna (100%)
2 1372 bp 24.56 6.12 100.58
NECEvent2014_8_5_scaffold_4283 178_005_scaffold_4283
Species: Escherichia coli (50%)
2 1830 bp 46.99 4.67 99.34
NECEvent2014_8_5_scaffold_5960 178_005_scaffold_5960
Species: Rahnella aquatilis (50%)
2 1106 bp 39.51 3.80 90.05
NECEvent2014_8_5_scaffold_6313 178_005_scaffold_6313
Species: human gut metagenome (100%)
2 1010 bp 25.05 6.53 70.10
NECEvent2014_8_5_scaffold_5454 178_005_scaffold_5454
Species: Peptoniphilus lacrimalis (100%)
2 1273 bp 31.19 38.06 98.04
NECEvent2014_8_5_scaffold_3533 178_005_scaffold_3533
Species: Clostridiales bacterium S5-A11 (100%)
2 2432 bp 33.26 8.82 100.41
NECEvent2014_8_5_scaffold_5719 178_005_scaffold_5719
Species: Anaerococcus hydrogenalis (100%)
2 1189 bp 33.81 13.37 90.33
NECEvent2014_8_5_scaffold_6075 178_005_scaffold_6075
Species: Erysipelotrichaceae bacterium 2_2_44A (50%)
2 1074 bp 47.49 359.78 32.68
NECEvent2014_8_5_scaffold_5726 178_005_scaffold_5726
Species: Klebsiella variicola (50%)
2 1188 bp 52.61 5.43 86.62
NECEvent2014_8_5_scaffold_4822 178_005_scaffold_4822
Species: Escherichia coli (50%)
2 1538 bp 59.56 34.82 96.75
NECEvent2014_8_5_scaffold_2522 178_005_scaffold_2522
Species: Citrobacter rodentium (50%)
2 3807 bp 35.70 24.27 43.18
NECEvent2014_8_5_scaffold_5988 178_005_scaffold_5988
Species: Citrobacter sp. MGH 55 (50%)
2 1099 bp 52.96 3.55 98.54
NECEvent2014_8_5_scaffold_4060 178_005_scaffold_4060
Species: Ruminococcus gnavus CAG:126 (50%)
2 1996 bp 35.37 8.94 47.95
NECEvent2014_8_5_scaffold_6352 178_005_scaffold_6352
Species: Salmonella enterica (100%)
1 1002 bp 28.64 3.59 26.35
Displaying items 101-150 of 187 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.