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NECEvent2014_8_5_scaffold_3085_2

Organism: NECEvent2014_8_5_Escherichia_coli_50_14_partial

partial RP 22 / 55 MC: 3 BSCG 17 / 51 MC: 2 ASCG 9 / 38 MC: 2
Location: comp(93..392)

Top 3 Functional Annotations

Value Algorithm Source
LpxR (Fragment) n=1 Tax=Escherichia coli 97.1742 RepID=L1GBY4_ECOLX similarity UNIREF
DB: UNIREF100
  • Identity: 71.7
  • Coverage: 99.0
  • Bit_score: 145
  • Evalue 3.20e-32
putative systemic factor protein similarity KEGG
DB: KEGG
  • Identity: 71.7
  • Coverage: 99.0
  • Bit_score: 145
  • Evalue 8.90e-33
Putative outer membrane protein {ECO:0000313|EMBL:AJA24774.1}; TaxID=1330457 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esche similarity UNIPROT
DB: UniProtKB
  • Identity: 71.7
  • Coverage: 99.0
  • Bit_score: 145
  • Evalue 4.40e-32

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 300
ATGAAAAAAAGCATCATCGTTGGAACATTTATTTTATCATCATTTATAGTCTCTCCAGTTAGCGCTGATATCATTACACTTTCATTAACTAATGATGATGCAGGTAAATTACAACCAATACTTAATGGAATCTACAACAACAAATATGAAGACAGAGATGATTATACACAGGGTTTATTTCTGGGTTATAGCCGCGACATCACAGACTCAAGCCAATTATCATTCCATATTGCGCAAGATATTTACTCCCCTTCAGCTAGTAATAAAAGGAATCACACAGCAGTAACAGGAGACCGGTGA
PROTEIN sequence
Length: 100
MKKSIIVGTFILSSFIVSPVSADIITLSLTNDDAGKLQPILNGIYNNKYEDRDDYTQGLFLGYSRDITDSSQLSFHIAQDIYSPSASNKRNHTAVTGDR*