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NECEvent2014_8_5_scaffold_5149_3

Organism: NECEvent2014_8_5_Escherichia_coli_50_14_partial

partial RP 22 / 55 MC: 3 BSCG 17 / 51 MC: 2 ASCG 9 / 38 MC: 2
Location: 754..978

Top 3 Functional Annotations

Value Algorithm Source
Cold shock-like protein CspD n=1412 Tax=Enterobacteriaceae RepID=CSPD_ECO57 similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 74.0
  • Bit_score: 158
  • Evalue 3.60e-36
cspD; stationary phase/starvation inducible regulatory protein CspD similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 74.0
  • Bit_score: 158
  • Evalue 1.00e-36
Cold shock domain protein CspD {ECO:0000313|EMBL:EHU47514.1}; TaxID=868141 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escheri similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 74.0
  • Bit_score: 158
  • Evalue 5.00e-36

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Taxonomy

Escherichia coli → Escherichia → Enterobacteriales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 225
ATGGAAAAGGGTACTGTTAAGTGGTTCAACAATGCCAAAGGGTTTGGTTTCATCTGCCCTGAAGGCGGCGGCGAAGATATTTTCGCTCATTATTCCACCATTCAGATGGATGGTTACAGAACGCTAAAAGCTGGACAATCCGTTCAGTTTGATGTCCACCAGGGGCCAAAAGGCAATCACGCCAGTGTTATTGTGCCCGTCGAAGTAGAAGCGGCAGTCGCATAG
PROTEIN sequence
Length: 75
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA*