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NECEvent2014_8_7_scaffold_16

Alias: 178_007_scaffold_16

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
NECEvent2014_8_7_scaffold_16_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..153)
DNA (153bp) protein (51aa)
30S ribosomal protein S20 n=1 Tax=Escherichia coli HVH 4 (4-7276109) RepID=T5P0T5_ECOLX
rpsT; 30S ribosomal protein S20
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escheric
NECEvent2014_8_7_scaffold_16_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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482..1423
DNA (942bp) protein (314aa)
ribF; riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=1281269 species="Bacteria; Proteobacte
Riboflavin biosynthesis protein RibF n=886 Tax=Enterobacteriaceae RepID=RIBF_ECO57 rbh
NECEvent2014_8_7_scaffold_16_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1466..4282
DNA (2817bp) protein (939aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=50 Tax=Escherichia coli RepID=E3PBB6_ECOH1 rbh
ileS; isoleucyl-tRNA synthetase rbh
NECEvent2014_8_7_scaffold_16_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4282..4776
DNA (495bp) protein (165aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
Lipoprotein signal peptidase n=914 Tax=Enterobacteriaceae RepID=LSPA_ECO24 rbh
NECEvent2014_8_7_scaffold_16_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4901..5350
DNA (450bp) protein (150aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales
FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase n=1341 Tax=Enterobacteriaceae RepID=FKBX_ECO57
FKBX-type 16KD peptidyl-prolyl cis-trans isomerase SlpA
NECEvent2014_8_7_scaffold_16_6
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5352..6302
DNA (951bp) protein (317aa)
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=972 Tax=Enterobacteriaceae RepID=ISPH_ECO24 rbh
NECEvent2014_8_7_scaffold_16_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6368..7282
DNA (915bp) protein (305aa)
rihC; ribonucleoside hydrolase 3 (EC:3.2.2.-)
Non-specific ribonucleoside hydrolase RihC {ECO:0000256|HAMAP-Rule:MF_01432}; EC=3.2.-.- {ECO:0000256|HAMAP-Rule:MF_01432};; Purine/pyrimidine ribonucleoside hydrolase {ECO:0000256|HAMAP-Rule:MF_01432
Non-specific ribonucleoside hydrolase RihC n=58 Tax=Escherichia coli RepID=B2ND56_ECOLX rbh
NECEvent2014_8_7_scaffold_16_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7449..8270
DNA (822bp) protein (274aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
4-hydroxy-tetrahydrodipicolinate reductase n=62 Tax=Escherichia coli RepID=B2ND55_ECOLX rbh
NECEvent2014_8_7_scaffold_16_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8726..9874
DNA (1149bp) protein (383aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
Carbamoyl-phosphate synthase small chain n=44 Tax=Escherichia coli RepID=B1IRE4_ECOLC rbh
carbamoyl-phosphate synthase small subunit
NECEvent2014_8_7_scaffold_16_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9892..13113
DNA (3222bp) protein (1074aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=868160 species="Bacteria; Proteobacteria; Gammaproteobacteria;
Carbamoyl-phosphate synthase large chain n=58 Tax=Escherichia coli RepID=B1IRE3_ECOLC rbh
carbamoyl-phosphate synthase large subunit
NECEvent2014_8_7_scaffold_16_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13375..13770
DNA (396bp) protein (132aa)
DNA-binding transcriptional activator CaiF n=2 Tax=Shigella flexneri RepID=I0V926_SHIFL
CaiF family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:KDU31490.1}; TaxID=1444252 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
NECEvent2014_8_7_scaffold_16_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13979..14569)
DNA (591bp) protein (197aa)
Carnitine operon protein CaiE n=72 Tax=Escherichia RepID=B2ND50_ECOLX rbh
Carnitine operon protein CaiE {ECO:0000256|HAMAP-Rule:MF_01525}; TaxID=749547 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Esch
caiE; acyl transferase rbh
NECEvent2014_8_7_scaffold_16_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14575..15360)
DNA (786bp) protein (262aa)
Carnitinyl-CoA dehydratase {ECO:0000256|HAMAP-Rule:MF_01051}; EC=4.2.1.149 {ECO:0000256|HAMAP-Rule:MF_01051};; Crotonobetainyl-CoA hydratase {ECO:0000256|HAMAP-Rule:MF_01051}; TaxID=910348 species="Ba
Carnitinyl-CoA dehydratase n=1 Tax=Escherichia coli 3003 RepID=I2YT44_ECOLX rbh
carnitinyl-CoA dehydratase
NECEvent2014_8_7_scaffold_16_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15469..17022)
DNA (1554bp) protein (518aa)
Probable crotonobetaine/carnitine-CoA ligase {ECO:0000256|HAMAP-Rule:MF_01524}; EC=6.2.1.- {ECO:0000256|HAMAP-Rule:MF_01524};; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Ent
Crotonobetaine/carnitine-CoA ligase n=75 Tax=Escherichia coli RepID=V8IUY6_ECOLX rbh
crotonobetaine/carnitine-CoA ligase CaiC rbh
NECEvent2014_8_7_scaffold_16_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17096..18313)
DNA (1218bp) protein (406aa)
L-carnitine CoA-transferase {ECO:0000256|HAMAP-Rule:MF_01050}; EC=2.8.3.21 {ECO:0000256|HAMAP-Rule:MF_01050};; Crotonobetainyl-CoA:carnitine CoA-transferase {ECO:0000256|HAMAP-Rule:MF_01050}; TaxID=14
Crotonobetainyl-CoA:carnitine CoA-transferase n=67 Tax=Escherichia coli RepID=B2ND47_ECOLX rbh
crotonobetainyl-CoA:carnitine CoA-transferase rbh
NECEvent2014_8_7_scaffold_16_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18442..19584)
DNA (1143bp) protein (381aa)
Crotonobetainyl-CoA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01052}; EC=1.3.99.- {ECO:0000256|HAMAP-Rule:MF_01052};; Crotonobetainyl-CoA reductase {ECO:0000256|HAMAP-Rule:MF_01052}; TaxID=1182699 spec
Crotonobetainyl-CoA dehydrogenase n=1275 Tax=Bacteria RepID=CAIA_ECO24 rbh
caiA; Crotonobetainyl-CoA dehydrogenase
NECEvent2014_8_7_scaffold_16_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19615..21129)
DNA (1515bp) protein (505aa)
L-carnitine/gamma-butyrobetaine antiporter n=603 Tax=Enterobacteriaceae RepID=CAIT_ECO24 rbh
L-carnitine/gamma-butyrobetaine antiporter {ECO:0000256|HAMAP-Rule:MF_01049}; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;
caiT; L-carnitine/gamma-butyrobetaine antiporter
NECEvent2014_8_7_scaffold_16_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21602..22372
DNA (771bp) protein (257aa)
Protein FixA n=547 Tax=Enterobacteriaceae RepID=FIXA_ECO24 rbh
hypothetical protein
Protein FixA {ECO:0000256|HAMAP-Rule:MF_01055}; TaxID=475609 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli chi7
NECEvent2014_8_7_scaffold_16_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22387..23328
DNA (942bp) protein (314aa)
Protein FixB n=300 Tax=Enterobacteriaceae RepID=FIXB_ECOBW rbh
fixB; putative electron transfer flavoprotein FixB rbh
Protein FixB {ECO:0000256|HAMAP-Rule:MF_01056}; TaxID=754086 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli STEC
NECEvent2014_8_7_scaffold_16_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23379..24665
DNA (1287bp) protein (429aa)
Protein FixC n=670 Tax=Enterobacteriaceae RepID=FIXC_ECOL6 rbh
fixC; putative oxidoreductase with FAD/NAD(P)-binding domain
FAD binding domain protein {ECO:0000313|EMBL:EHU33914.1}; TaxID=868138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia
NECEvent2014_8_7_scaffold_16_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24662..24949
DNA (288bp) protein (96aa)
Ferredoxin-like protein FixX n=1153 Tax=Enterobacteriaceae RepID=FIXX_ECO57
fixX; ferredoxin-like protein FixX
Ferredoxin-like protein fixX {ECO:0000313|EMBL:EHP65186.1}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escheric
NECEvent2014_8_7_scaffold_16_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25006..26337
DNA (1332bp) protein (444aa)
Putative metabolite transport protein YaaU n=611 Tax=Enterobacteriaceae RepID=YAAU_ECOLI rbh
transporter
Metabolite transporter YaaU {ECO:0000313|EMBL:EOV72460.1}; TaxID=1182680 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherich
NECEvent2014_8_7_scaffold_16_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26445..26975
DNA (531bp) protein (177aa)
Glutathione-regulated potassium-efflux system ancillary protein KefF n=848 Tax=Enterobacteriaceae RepID=KEFF_ECO24 rbh
NAD(P)H dehydrogenase (quinone)
Glutathione-regulated potassium-efflux system ancillary protein KefF {ECO:0000256|HAMAP-Rule:MF_01414}; Quinone oxidoreductase KefF {ECO:0000256|HAMAP-Rule:MF_01414}; TaxID=1281213 species="Bacteria;
NECEvent2014_8_7_scaffold_16_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26968..28830
DNA (1863bp) protein (621aa)
Glutathione-regulated potassium-efflux system protein KefC n=97 Tax=Escherichia coli RepID=KEFC_ECOBW rbh
Glutathione-regulated potassium-efflux system protein KefC {ECO:0000256|HAMAP-Rule:MF_01413}; K(+)/H(+) antiporter {ECO:0000256|HAMAP-Rule:MF_01413}; TaxID=1268976 species="Bacteria; Proteobacteria; G
glutathione-regulated potassium-efflux system protein KefC
NECEvent2014_8_7_scaffold_16_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28911..29501
DNA (591bp) protein (197aa)
dihydrofolate reductase n=1 Tax=Escherichia coli RepID=UPI000366A1F6 rbh
folA; dihydrofolate reductase
Dihydrofolate reductase {ECO:0000313|EMBL:ELE59156.1}; TaxID=1182682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia c
NECEvent2014_8_7_scaffold_16_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29579..30421)
DNA (843bp) protein (281aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|HAMAP-Rule:MF_00199, ECO:0000256|SAAS:SAAS00088330};; Ap4A hy
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical n=290 Tax=Enterobacteriaceae RepID=APAH_ECO55 rbh
bis(5'-nucleosyl)-tetraphosphatase
NECEvent2014_8_7_scaffold_16_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30428..30805)
DNA (378bp) protein (126aa)
Protein ApaG n=1175 Tax=Enterobacteriaceae RepID=APAG_ECO24
Co2+ and Mg2+ efflux associated protein ApaG
Protein ApaG {ECO:0000256|HAMAP-Rule:MF_00791, ECO:0000256|SAAS:SAAS00014786}; TaxID=1446580 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
NECEvent2014_8_7_scaffold_16_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(30808..31629)
DNA (822bp) protein (274aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
Ribosomal RNA small subunit methyltransferase A n=574 Tax=Enterobacteriaceae RepID=RSMA_ECO7I rbh
rsmA; 16S rRNA dimethyladenosine transferase, SAM-dependent rbh
NECEvent2014_8_7_scaffold_16_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31626..32615)
DNA (990bp) protein (330aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
4-hydroxythreonine-4-phosphate dehydrogenase n=100 Tax=Escherichia coli RepID=PDXA_ECOBW rbh
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase
NECEvent2014_8_7_scaffold_16_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32615..33901)
DNA (1287bp) protein (429aa)
peptidyl-prolyl cis-trans isomerase SurA (EC:5.2.1.8)
Chaperone SurA n=1232 Tax=Enterobacteriaceae RepID=SURA_ECO57 rbh
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01
Displaying items 1-30 of 52 in total

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