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OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 451-500 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_1844
Species: Flavihumibacter solisilvae (50%)
2 2453 bp 38.48 6.24 93.56
OR_07182017_23_scaffold_1418
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 3957 bp 38.62 5.42 93.56
OR_07182017_23_scaffold_776
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
10 7045 bp 40.24 4.96 93.56
OR_07182017_23_scaffold_273
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (87.5%)
8 10763 bp 38.74 5.63 93.54
OR_07182017_23_scaffold_2935
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1517 bp 37.57 4.15 93.54
OR_07182017_23_scaffold_598
Phylum: Bacteroidetes (80%)
5 6047 bp 40.83 5.48 93.52
OR_07182017_23_scaffold_886
Order: Sphingobacteriales (64.29%)
14 12266 bp 35.21 5.88 93.48
OR_07182017_23_scaffold_2918
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1531 bp 38.67 5.78 93.47
OR_07182017_23_scaffold_1769
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2543 bp 38.14 4.13 93.43
OR_07182017_23_scaffold_1737
Species: Niastella koreensis (50%)
2 2576 bp 41.38 4.13 93.40
OR_07182017_23_scaffold_1110
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 4623 bp 37.27 5.55 93.38
OR_07182017_23_scaffold_284
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (68.75%)
16 17879 bp 38.20 5.65 93.38
OR_07182017_23_scaffold_1165
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 3634 bp 34.53 4.87 93.37
OR_07182017_23_scaffold_509
Order: Cytophagales (50%)
6 6795 bp 35.06 5.19 93.33
OR_07182017_23_scaffold_2789
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1614 bp 45.23 4.93 93.31
OR_07182017_23_scaffold_939
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 4376 bp 41.64 4.76 93.30
OR_07182017_23_scaffold_1825
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2476 bp 41.80 4.91 93.30
OR_07182017_23_scaffold_3809
Species: Runella slithyformis (50%)
2 1177 bp 40.95 5.48 93.29
OR_07182017_23_scaffold_4088
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1097 bp 39.93 3.83 93.25
OR_07182017_23_scaffold_1010
Order: Sphingobacteriales (50%)
6 4176 bp 43.51 5.78 93.25
OR_07182017_23_scaffold_289
Phylum: Bacteroidetes (71.43%)
7 10347 bp 38.64 4.86 93.22
OR_07182017_23_scaffold_4057
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1104 bp 40.76 5.30 93.21
OR_07182017_23_scaffold_1447
Phylum: Bacteroidetes (100%)
3 3045 bp 36.85 5.22 93.20
OR_07182017_23_scaffold_3941
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1130 bp 38.58 5.18 93.19
OR_07182017_23_scaffold_292
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (77.78%)
9 10313 bp 36.61 6.31 93.14
OR_07182017_23_scaffold_410
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (92.31%)
13 10890 bp 40.75 5.08 93.14
OR_07182017_23_scaffold_165
Phylum: Bacteroidetes (89.47%)
19 17034 bp 35.59 6.33 93.11
OR_07182017_23_scaffold_1138
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 3735 bp 41.82 5.90 93.09
OR_07182017_23_scaffold_1616
Order: Cytophagales (66.67%)
3 2772 bp 35.17 5.36 93.07
OR_07182017_23_scaffold_3726
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1200 bp 42.00 5.38 93.00
OR_07182017_23_scaffold_1435
Species: Flavihumibacter solisilvae (66.67%)
3 3071 bp 41.16 5.81 93.00
OR_07182017_23_scaffold_2468
Species: Chitinophaga pinensis (66.67%)
3 1823 bp 39.33 5.51 92.98
OR_07182017_23_scaffold_2221
Order: Sphingobacteriales (50%)
4 3546 bp 38.47 4.91 92.98
OR_07182017_23_scaffold_415
Order: Sphingobacteriales (63.64%)
11 8128 bp 36.12 6.26 92.94
OR_07182017_23_scaffold_578
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 6202 bp 36.54 6.22 92.92
OR_07182017_23_scaffold_240
Phylum: Bacteroidetes (88.89%)
9 11779 bp 38.76 5.59 92.91
OR_07182017_23_scaffold_360
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
10 9642 bp 36.43 5.71 92.91
OR_07182017_23_scaffold_1018
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (57.14%)
7 7737 bp 39.12 5.12 92.90
OR_07182017_23_scaffold_1266
Phylum: Bacteroidetes (75%)
4 3414 bp 43.00 4.39 92.88
OR_07182017_23_scaffold_918
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
6 4467 bp 39.22 5.10 92.88
OR_07182017_23_scaffold_762
Phylum: Bacteroidetes (100%)
7 7403 bp 36.38 5.55 92.84
OR_07182017_23_scaffold_654
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 5690 bp 40.58 5.06 92.79
OR_07182017_23_scaffold_1570
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2842 bp 41.45 5.70 92.79
OR_07182017_23_scaffold_739
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (85.71%)
7 5171 bp 40.38 5.45 92.77
OR_07182017_23_scaffold_1146
Phylum: Bacteroidetes (60%)
5 3690 bp 37.24 4.43 92.76
OR_07182017_23_scaffold_1360
Species: Flavihumibacter sp. ZG627 (75%)
4 3203 bp 39.93 5.67 92.73
OR_07182017_23_scaffold_2043
Phylum: Bacteroidetes (66.67%)
3 2226 bp 38.95 4.58 92.72
OR_07182017_23_scaffold_139
Phylum: Bacteroidetes (94.12%)
17 22718 bp 35.52 5.14 92.70
OR_07182017_23_scaffold_1596
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2806 bp 43.62 5.02 92.69
OR_07182017_23_scaffold_1127
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 3764 bp 34.91 5.90 92.69
Displaying items 451-500 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.