ggKbase home page

OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 101-150 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_1353
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 3213 bp 38.81 4.39 96.08
OR_07182017_23_scaffold_4244
Species: Bacteroides ovatus (50%)
2 1059 bp 33.52 4.39 86.97
OR_07182017_23_scaffold_1266
Phylum: Bacteroidetes (75%)
4 3414 bp 43.00 4.39 92.88
OR_07182017_23_scaffold_764
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 5055 bp 36.74 4.39 90.45
OR_07182017_23_scaffold_3347
Species: Saccharicrinis fermentans (50%)
2 1331 bp 38.54 4.40 77.76
OR_07182017_23_scaffold_1441
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3057 bp 38.89 4.42 97.55
OR_07182017_23_scaffold_3448
Phylum: Bacteroidetes (100%)
3 1291 bp 38.34 4.42 88.54
OR_07182017_23_scaffold_3453
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1289 bp 37.78 4.42 94.49
OR_07182017_23_scaffold_950
Species: Haliscomenobacter hydrossis (50%)
2 4346 bp 45.28 4.42 98.85
OR_07182017_23_scaffold_1066
Species: Flavihumibacter sp. ZG627 (66.67%)
3 3970 bp 40.10 4.42 94.08
OR_07182017_23_scaffold_1146
Phylum: Bacteroidetes (60%)
5 3690 bp 37.24 4.43 92.76
OR_07182017_23_scaffold_2301
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1962 bp 40.57 4.43 100.00
OR_07182017_23_scaffold_2882
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1554 bp 39.70 4.44 77.03
OR_07182017_23_scaffold_2888
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1550 bp 37.42 4.45 90.00
OR_07182017_23_scaffold_1977
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 2294 bp 39.80 4.45 98.87
OR_07182017_23_scaffold_2237
Order: Sphingobacteriales (66.67%)
3 2024 bp 40.76 4.45 98.72
OR_07182017_23_scaffold_1107
Phylum: Bacteroidetes (50%)
4 3835 bp 35.20 4.46 81.36
OR_07182017_23_scaffold_2380
Species: Haliscomenobacter hydrossis (50%)
2 1882 bp 37.09 4.46 89.27
OR_07182017_23_scaffold_2429
Species: Flavihumibacter sp. ZG627 (50%)
2 1848 bp 37.45 4.46 95.13
OR_07182017_23_scaffold_993
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
6 5107 bp 41.55 4.46 92.46
OR_07182017_23_scaffold_2778
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2423 bp 38.84 4.46 85.43
OR_07182017_23_scaffold_2481
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1812 bp 43.93 4.47 74.17
OR_07182017_23_scaffold_3159
Species: Flavihumibacter petaseus (50%)
2 1406 bp 37.06 4.48 97.30
OR_07182017_23_scaffold_3818
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1173 bp 42.80 4.48 83.12
OR_07182017_23_scaffold_1326
Order: Sphingobacteriales (100%)
3 3279 bp 38.94 4.48 97.16
OR_07182017_23_scaffold_880
Phylum: Bacteroidetes (60%)
5 5696 bp 38.04 4.50 94.28
OR_07182017_23_scaffold_1971
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2302 bp 41.27 4.50 97.22
OR_07182017_23_scaffold_3341
Species: Niastella koreensis (100%)
2 1333 bp 35.78 4.50 86.65
OR_07182017_23_scaffold_1865
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2426 bp 38.17 4.51 96.46
OR_07182017_23_scaffold_1647
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2726 bp 43.51 4.51 91.45
OR_07182017_23_scaffold_2044
Order: Sphingobacteriales (80%)
5 2224 bp 39.70 4.52 97.75
OR_07182017_23_scaffold_1708
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2614 bp 41.81 4.53 97.78
OR_07182017_23_scaffold_2084
Phylum: Bacteroidetes (50%)
4 2180 bp 35.50 4.54 93.58
OR_07182017_23_scaffold_3662
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 1222 bp 36.66 4.54 94.27
OR_07182017_23_scaffold_681
Phylum: Bacteroidetes (80%)
5 5522 bp 40.95 4.54 87.47
OR_07182017_23_scaffold_2781
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1619 bp 40.27 4.54 97.84
OR_07182017_23_scaffold_3861
Species: Niabella soli (50%)
2 1154 bp 41.07 4.55 50.43
OR_07182017_23_scaffold_1122
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 3793 bp 37.94 4.55 81.70
OR_07182017_23_scaffold_2886
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
3 1551 bp 38.30 4.55 99.61
OR_07182017_23_scaffold_2179
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2079 bp 37.47 4.55 89.32
OR_07182017_23_scaffold_2525
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1781 bp 42.67 4.55 99.89
OR_07182017_23_scaffold_1602
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2797 bp 38.72 4.56 98.68
OR_07182017_23_scaffold_4285
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 1050 bp 38.48 4.57 86.86
OR_07182017_23_scaffold_4155
Species: Flavihumibacter sp. ZG627 (100%)
1 1081 bp 42.83 4.58 99.91
OR_07182017_23_scaffold_3694
Species: Flavobacteria bacterium MS024-2A (50%)
2 1211 bp 39.55 4.58 98.10
OR_07182017_23_scaffold_2951
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
2 1508 bp 33.95 4.58 85.54
OR_07182017_23_scaffold_1220
Phylum: Bacteroidetes (80%)
5 3508 bp 37.09 4.58 93.81
OR_07182017_23_scaffold_2043
Phylum: Bacteroidetes (66.67%)
3 2226 bp 38.95 4.58 92.72
OR_07182017_23_scaffold_1114
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
5 3821 bp 40.17 4.59 96.57
OR_07182017_23_scaffold_890
Order: Sphingobacteriales (50%)
4 4545 bp 38.22 4.59 99.80
Displaying items 101-150 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.