ggKbase home page

OR_07182017_23_Bacteroidetes_38_5

In projects: OR_07182017_23  |  mine_tailing_impoundment_time_series  |  SOB_across_mines

Consensus taxonomy: Bacteroidetes  →  Bacteria

Taxonomy override: Bacteroidetes

Description

Coverage profile OK.

Displaying items 201-250 of 843 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
OR_07182017_23_scaffold_909
Order: Sphingobacteriales (62.5%)
8 7560 bp 37.09 5.71 87.14
OR_07182017_23_scaffold_711
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 5333 bp 40.09 5.71 92.20
OR_07182017_23_scaffold_1789
Species: Niabella soli (50%)
2 2524 bp 40.25 5.71 95.44
OR_07182017_23_scaffold_445
Phylum: Bacteroidetes (58.33%)
12 11114 bp 33.98 5.70 77.98
OR_07182017_23_scaffold_237
Phylum: Bacteroidetes (84.62%)
13 11847 bp 37.98 5.70 96.78
OR_07182017_23_scaffold_763
Phylum: Bacteroidetes (83.33%)
6 5057 bp 37.97 5.70 91.24
OR_07182017_23_scaffold_771
Order: Sphingobacteriales (66.67%)
3 5023 bp 38.10 5.70 99.08
OR_07182017_23_scaffold_1570
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (75%)
4 2842 bp 41.45 5.70 92.79
OR_07182017_23_scaffold_2613
Species: Pedobacter heparinus (100%)
2 1713 bp 37.65 5.69 94.40
OR_07182017_23_scaffold_903
Order: Sphingobacteriales (50%)
6 4510 bp 39.91 5.69 94.39
OR_07182017_23_scaffold_690
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
10 6225 bp 38.47 5.69 92.08
OR_07182017_23_scaffold_1493
Order: Sphingobacteriales (66.67%)
3 2955 bp 38.27 5.69 94.11
OR_07182017_23_scaffold_2471
Order: Sphingobacteriales (66.67%)
3 1819 bp 40.24 5.69 99.45
OR_07182017_23_scaffold_301
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (70%)
10 10069 bp 37.93 5.68 98.35
OR_07182017_23_scaffold_636
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 5754 bp 40.86 5.68 97.65
OR_07182017_23_scaffold_154
Species: Niastella koreensis (53.33%)
15 18590 bp 37.42 5.68 94.99
OR_07182017_23_scaffold_3309
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
1 1348 bp 38.95 5.68 67.88
OR_07182017_23_scaffold_1360
Species: Flavihumibacter sp. ZG627 (75%)
4 3203 bp 39.93 5.67 92.73
OR_07182017_23_scaffold_899
Order: Sphingobacteriales (66.67%)
3 4520 bp 37.92 5.67 90.66
OR_07182017_23_scaffold_1660
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2702 bp 38.19 5.66 99.82
OR_07182017_23_scaffold_1992
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 2279 bp 36.24 5.66 95.70
OR_07182017_23_scaffold_225
Phylum: Bacteroidetes (69.23%)
13 12482 bp 37.89 5.66 88.78
OR_07182017_23_scaffold_288
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (88.89%)
9 10410 bp 38.54 5.66 91.90
OR_07182017_23_scaffold_350
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
10 9233 bp 39.21 5.65 90.86
OR_07182017_23_scaffold_718
Phylum: Bacteroidetes (100%)
9 8197 bp 38.37 5.65 95.49
OR_07182017_23_scaffold_499
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (80%)
10 7758 bp 35.61 5.65 87.86
OR_07182017_23_scaffold_283
Phylum: Bacteroidetes (75%)
12 10496 bp 35.86 5.65 94.75
OR_07182017_23_scaffold_284
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (68.75%)
16 17879 bp 38.20 5.65 93.38
OR_07182017_23_scaffold_1869
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2421 bp 38.46 5.64 95.91
OR_07182017_23_scaffold_335
Order: Sphingobacteriales (83.33%)
6 9503 bp 40.66 5.64 94.27
OR_07182017_23_scaffold_850
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (83.33%)
6 4706 bp 38.78 5.64 96.20
OR_07182017_23_scaffold_145
Phylum: Bacteroidetes (100%)
21 22112 bp 38.12 5.64 95.79
OR_07182017_23_scaffold_817
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (66.67%)
3 4849 bp 37.78 5.63 99.18
OR_07182017_23_scaffold_2343
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 1919 bp 39.97 5.63 74.41
OR_07182017_23_scaffold_599
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (71.43%)
7 6044 bp 39.03 5.63 95.00
OR_07182017_23_scaffold_1420
Phylum: Bacteroidetes (66.67%)
3 3090 bp 38.67 5.63 92.14
OR_07182017_23_scaffold_914
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
4 4476 bp 41.40 5.63 99.80
OR_07182017_23_scaffold_1453
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 3038 bp 39.76 5.63 91.54
OR_07182017_23_scaffold_526
Phylum: Bacteroidetes (83.33%)
6 6639 bp 35.22 5.63 95.12
OR_07182017_23_scaffold_273
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (87.5%)
8 10763 bp 38.74 5.63 93.54
OR_07182017_23_scaffold_2128
Species: Joostella marina (100%)
1 2137 bp 41.27 5.62 99.81
OR_07182017_23_scaffold_182
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (68.42%)
19 15747 bp 38.41 5.62 89.54
OR_07182017_23_scaffold_2230
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (100%)
2 2030 bp 37.54 5.62 93.69
OR_07182017_23_scaffold_465
Phylum: Bacteroidetes (62.5%)
8 7264 bp 38.31 5.62 65.58
OR_07182017_23_scaffold_2339
Species: Pedobacter heparinus (50%)
2 1926 bp 34.84 5.61 98.29
OR_07182017_23_scaffold_338
Species: Niastella koreensis (50%)
4 9437 bp 37.12 5.61 99.18
OR_07182017_23_scaffold_1140
Species: Runella slithyformis (50%)
2 3715 bp 40.05 5.61 98.28
OR_07182017_23_scaffold_2403
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (60%)
5 3129 bp 38.83 5.61 94.06
OR_07182017_23_scaffold_765
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
4 5054 bp 40.86 5.61 91.65
OR_07182017_23_scaffold_548
Species: RIFOXYD2_FULL_Sphingobacteria_35_12_curated (50%)
6 6445 bp 41.16 5.61 81.92
Displaying items 201-250 of 843 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.