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OR_08082017_10m_0_2um_scaffold_233

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_08082017_10m_0_2um_scaffold_233_1
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(105..983)
-----------------
DNA (879bp)
protein (293aa)
Cellulose synthase catalytic subunit (UDP-forming) (EC:2.4.1.12)
Cellulose synthase catalytic subunit (UDP-forming) {ECO:0000313|EMBL:AIA54405.1}; EC=2.4.1.12 {ECO:0000313|EMBL:AIA54405.1};; TaxID=637389 species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus caldus ATCC 51756.;"
Cellulose synthase catalytic subunit (UDP-forming) n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUS3_9GAMM
OR_08082017_10m_0_2um_scaffold_233_2
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1212..1910)
-----------------
DNA (699bp)
protein (233aa)
Electron transport complex protein RnfE n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1N2_HALNC
RnfABCDGE type electron transport complex subunit E
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_3
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1903..2670)
-----------------
DNA (768bp)
protein (256aa)
Electron transport complex, RnfABCDGE type, G subunit n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1N3_HALNC
RnfABCDGE type electron transport complex subunit G
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_4
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2667..3728)
-----------------
DNA (1062bp)
protein (354aa)
Electron transport complex protein RnfD n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1N4_HALNC
RnfABCDGE type electron transport complex subunit D
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_5
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3739..5460)
-----------------
DNA (1722bp)
protein (574aa)
Electron transport complex protein RnfC n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1N5_HALNC
RnfABCDGE type electron transport complex subunit C
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_6
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5453..6100)
-----------------
DNA (648bp)
protein (216aa)
Electron transport complex protein RnfB n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1N6_HALNC
RnfABCDGE type electron transport complex subunit beta
Electron transport complex subunit B {ECO:0000256|HAMAP-Rule:MF_00463}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_7
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6100..6681)
-----------------
DNA (582bp)
protein (194aa)
Electron transport complex protein RnfA n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1N7_HALNC
RnfABCDGE type electron transport complex subunit alpha
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_8
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6824..7540)
-----------------
DNA (717bp)
protein (239aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:ACX96649.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ACX96649.1};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
DNA polymerase III, epsilon subunit n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1S6_HALNC
OR_08082017_10m_0_2um_scaffold_233_9
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7556..8044)
-----------------
DNA (489bp)
protein (163aa)
ribonuclease H (EC:3.1.26.4)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Ribonuclease H n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1S8_HALNC
OR_08082017_10m_0_2um_scaffold_233_10
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8023..8922)
-----------------
DNA (900bp)
protein (300aa)
Methyltransferase type 11 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1S9_HALNC
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACX96652.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_11
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8922..10133)
-----------------
DNA (1212bp)
protein (404aa)
Major facilitator superfamily MFS_1 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1T0_HALNC
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACX96653.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_12
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10192..11298)
-----------------
DNA (1107bp)
protein (369aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Chorismate synthase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1T2_HALNC
OR_08082017_10m_0_2um_scaffold_233_13
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11451..13055
-----------------
DNA (1605bp)
protein (535aa)
AMP-dependent synthetase and ligase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1T3_HALNC
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ACX96656.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_14
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13052..14407
-----------------
DNA (1356bp)
protein (452aa)
Orn/DAP/Arg decarboxylase 2 n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1T4_HALNC
orn/DAP/Arg decarboxylase 2
Orn/DAP/Arg decarboxylase 2 {ECO:0000313|EMBL:ACX96657.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_15
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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14430..15605
-----------------
DNA (1176bp)
protein (392aa)
Metal dependent phosphohydrolase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DA16_9GAMM
phosphohydrolase
Phosphohydrolase {ECO:0000313|EMBL:AHF00359.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
OR_08082017_10m_0_2um_scaffold_233_16
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15701..16168
-----------------
DNA (468bp)
protein (156aa)
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
3-dehydroquinate dehydratase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0I0_HALNC
OR_08082017_10m_0_2um_scaffold_233_17
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16222..16665
-----------------
DNA (444bp)
protein (148aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0I1_HALNC
acetyl-CoA carboxylase, biotin carboxyl carrier protein
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:ACX96204.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_18
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16693..18036
-----------------
DNA (1344bp)
protein (448aa)
Acetyl-CoA carboxylase, biotin carboxylase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0I2_HALNC
acetyl-CoA carboxylase, biotin carboxylase
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:ACX96205.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_19
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18036..18947
-----------------
DNA (912bp)
protein (304aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Ribosomal protein L11 methyltransferase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L0I3_HALNC
50S ribosomal protein L11 methyltransferase
OR_08082017_10m_0_2um_scaffold_233_20
Mycobacterium vulneris, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(19085..19597)
-----------------
DNA (513bp)
protein (171aa)
Uncharacterized protein n=1 Tax=Capnocytophaga sp. oral taxon 329 str. F0087 RepID=F3Y2I2_9FLAO
PPE family protein {ECO:0000313|EMBL:CDO32241.1}; Flags: Precursor;; TaxID=547163 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium vulneris.;"
hypothetical protein
OR_08082017_10m_0_2um_scaffold_233_21
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19723..20601
-----------------
DNA (879bp)
protein (293aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLH5_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ89403.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_08082017_10m_0_2um_scaffold_233_22
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20594..21904
-----------------
DNA (1311bp)
protein (437aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4T6_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDW93216.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_08082017_10m_0_2um_scaffold_233_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21978..22760)
-----------------
DNA (783bp)
protein (261aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4T5_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31749.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_08082017_10m_0_2um_scaffold_233_24
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23001..24746
-----------------
DNA (1746bp)
protein (582aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
Glutamine--tRNA ligase n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L033_HALNC
glutaminyl-tRNA synthetase
OR_08082017_10m_0_2um_scaffold_233_trna_1
unknown

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24822..24895
-----------------
DNA (74bp)
transferRNA Met
OR_08082017_10m_0_2um_scaffold_233_trna_2
unknown

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25657..25729
-----------------
DNA (73bp)
transferRNA Ala
OR_08082017_10m_0_2um_scaffold_233_25
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25929..26495
-----------------
DNA (567bp)
protein (189aa)
Integrase family protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0KY10_HALNC
integrase family protein
Integrase family protein {ECO:0000313|EMBL:ACX95333.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
OR_08082017_10m_0_2um_scaffold_233_26
Pseudomonas sp. Lz4W, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26844..30032)
-----------------
DNA (3189bp)
protein (1063aa)
hypothetical protein n=1 Tax=Pseudomonas fragi RepID=UPI0003164A1A
Uncharacterized protein {ECO:0000313|EMBL:EMI08288.1}; TaxID=1206777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Lz4W.;"
hypothetical protein
OR_08082017_10m_0_2um_scaffold_233_27
unknown

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30087..30182
-----------------
DNA (96bp)
protein (32aa)

This feature has no annotations

Displaying 29 items

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